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Detailed information on CNT30380227


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 4e-80

BLAST vs NONCODE:
NONBNAT006042, E-value = 4e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Manihot esculentaSetaria viridis32.1327.1390.3134forward
CNT30639580Manihot esculentaNymphaea colorata20.1418.591.6784forward
CNT30517189Manihot esculentaJuglans regia35.4938.0585.14148forward
CNT30376211Manihot esculentaArabidopsis thaliana38.1321.9990.57159forward
CNT30619260Manihot esculentaSesamum indicum37.8914.8489.24158forward
CNT3020603Manihot esculentaCitrullus lanatus37.6510.1492.99157forward
CNT30402445Manihot esculentaBeta vulgaris29.9828.1591.2125forward
CNT30628366Manihot esculentaVigna unguiculata45.0813.1685.64188forward
CNT30200315Manihot esculentaPisum sativum27.121.993.81113forward
CNT30709695Manihot esculentaGlycine max29.9837.4396125forward
CNT30543653Manihot esculentaBrassica napus97.8459.1385.54408forward
CNT30261371Manihot esculentaBrassica rapa31.4131.3494.66131forward
CNT30612558Manihot esculentaArabis alpina37.4141.3887.82156forward
CNT30601056Manihot esculentaFraxinus excelsior35.0126.9982.19146forward
CNT30607325Manihot esculentaGossypium raimondii34.5311.1695.14144forward
CNT30231757Manihot esculentaAnanas comosus22.335.3688.1793forward
CNT30651401Manihot esculentaRosa chinensis37.6558.5889.17157forward
CNT30573685Manihot esculentaVitis vinifera37.6540.2684.71157forward
CNT30705212Manihot esculentaPrunus avium19.4222.0195.0681forward
CNT30645006Manihot esculentaCannabis sativa27.8214.0982.76116forward
CNT3021984Manihot esculentaPopulus trichocarpa38.377.4893.75160forward
CNT30329805Manihot esculentaDioscorea rotundata29.7421.1289.52124forward
CNT30103876Manihot esculentaOryza rufipogon35.7332.8990.6149forward
CNT30117878Manihot esculentaOryza nivara36.4533.7890.79152forward
CNT30723196Manihot esculentaLupinus angustifolius58.2730.4989.3243forward

Expression of CNT30380227

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRRPSANTMMPVLVSGNTHLSVSSPCISISLSK*

>peptide 2 (49 aa)
MHINFIIKVTNVANNGIVLHLPHVINHDDVLVTSGGDKDISLGNNIFKGQ

Sequence

>CNT30380227
GTGAGGTGAGCTCCAAGCTTCCCTAGGTGAAGAGCAGCAACCTTCTCATCAAGGTGCTTAGGCAAAACATACACTTTCTTCTCATATTTGCCAGTTCCCT
TCTCCCTCCACAACTCAAGCTGTGCAATCACCTGATTGGTGAAAGAGCATGACATCACGAAGCTGGGGTGACCAGTGGCACAACCCAAATTCATGAGACG
CCCCTCAGCCAACACAATGATGCCTGTTTTGGTCTCAGGGAACACCCACCTATCAGTCTCAAGTCCATGCATATCAATTTCATTATCAAAGTGACCAATG
TTGCAAACAATGGCATTGTTCTTCATCTTCCTCATGTGATCAACCATGATGATGTCCTTGTTACCAGTGGTGGTGACAAAGATATCAGCCTCGGAAACAA
CATCTTCAAGGGTCAAC