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Detailed information on CNT30380220


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38850|MYB5_ARATH, E-value = 1e-51

BLAST vs NONCODE:
NONMEST004151, E-value = 5e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3044623Manihot esculentaPrunus dulcis18.8665.7183.84297forward
CNT30159419Manihot esculentaPistacia vera18.4130.7984.48290forward
CNT30608078Manihot esculentaGossypium raimondii14.2933.9481.78225forward
CNT3031669Manihot esculentaTheobroma cacao14.2257.7383.04224forward
CNT3021790Manihot esculentaPopulus trichocarpa19.5630.3784.74308forward

Expression of CNT30380220

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MALSLTLPCCNTASSLVVVLLLQTQRVMGFSSYSSSSFSGL*

>peptide 2 (34 aa)
MRLRFDLFMAFGEKMFDEEMVQFFKGFSHLLFFL*

>peptide 3 (34 aa)
MKRWFNFLRASRTFCFFCNKRLLFRYMPTSSNRE*

>peptide 4 (97 aa)
MIKRFKVKRLVGSWINSLAYQLLAEKAMQSKNEIFFIRSDLAAFYTGTQVVHPSETATLTTAEKSSSFRQGTPATFPFFFDVVDKKLILFRCPWPSL*

>peptide 5 (68 aa)
ILVFRSSSCKHSHNVTNTFSAIFLTDRYSHTNREKLLSSCILNFFFLLLSICFISRQTCAASKTSFKF*

>peptide 6 (50 aa)
MAGISIIVPRQLVMMIQGSVFNAYIFFVADDLCTAPAVRFFHTRRRSCNS*

>peptide 7 (50 aa)
MHTFSLLLMICVLPPLFVSSTPEEGAATVELLLLLIRPDVLRLALDEEAF*

Sequence

>CNT30380220
TATACTTGTCTTTCGCTCCTCTTCATGCAAACATTCACACAATGTGACGAACACTTTCTCTGCAATCTTTCTGACAGATAGATATTCCCATACAAACAGA
GAAAAACTACTCTCTTCTTGTATTCTAAACTTTTTTTTCCTTCTACTTTCTATCTGCTTCATTTCTCGCCAAACATGTGCAGCTTCAAAAACATCGTTCA
AGTTTTGATATAAAGATTGCGAGCCGGCGAATGCAGGTGCTGCATTTGGAATATAGACGTACTGCTAGTGGAGATGATCGTTAACCCTCTTGCTGGGATC
ATTTTGGTTAGTGGGGGACATGAGAACAGATTCCCAGCTAGGGCCATAGCCAAAAGTTGAAGTACTGGTTGAAAGCAAAGGATCCGAACTGGCCACAATC
AGGTTGCCTTCTTGCTGCATCTGCTGGCTAGTGAAAGCTTCCTCATTGATAAGTGAATTGAGAAATGAAGAGAAGACATCGTCGGTGCCGTAATTGATAT
CTTCGTCTTCTTCGTTGCTAAGCCCTTGAGCGTTGCTTATCAAATGCATCCCACAAGTACCATTACCACAATTCAGCAAACTTGAATATCCATGGCTGGG
ATCAGCATTATTGTTCCCCGTCAATTGGTAATGATGATCCAAGGAAGTGTTTTCAATGCATACATTTTCTTTGTTGCTGATGATCTGTGTACTGCCCCCG
CTGTTCGTTTCTTCCACACCAGAAGAAGGAGCTGCAACAGTTGAATTATTATTATTACTCATAAGGCCTGATGTTTTGCGATTGGCTTTAGATGAAGAAG
CTTTTTGATGATCAAAAGATTCAAGGTTAAGCGGCTTGTGGGTTCTTGGATCAATTCCTTGGCTTATCAGCTTCTTGCTGAGAAGGCGATGCAGTCGAAG
AATGAGATCTTCTTCATCAGGAGCGATCTGGCCGCGTTTTACACAGGGACGCAGGTAGTTCATCCATCGGAGACGGCAACTCTTACCACAGCGGAGAAGT
CCAGCTCTTTTAGGCAAGGTACGCCAGCGACCTTCCCCTTCTTTTTTGATGTAGTTGACAAGAAGCTCATCCTCTTCAGGTGTCCATGGCCCTCTCTTTA
ACCCTACCTTGCTGCAACACGGCGTCTTCGCTGGTTGTGGTCCTTCTCCTGCAGACGCAGAGGGTGATGGGTTTCTCATCTTATTCTTCTTCTTCTTTCT
CTGGACTATGAATTCAAACAAATCTATATATGTTTCGCTGGTGAATGAGATTGAGATTTGATCTTTTTATGGCTTTTGGAGAAAAGATGTTCGATGAAGA
GATGGTTCAATTTTTTAAGGGCTTCTCGCACCTTTTGTTTTTTTTGTAATAAAAGATTATTGTTCAGATATATGCCCACGAGCAGTAACAGGGAATGAAG
AACACGCGCCTAAAAAGTTTGGTGGCCATTTTTGATGGGCTAGTGACTTTATCCAAATGACCAGCTTGTCACTTGAATGGCTCTGTGCTTAATCTGAATC
GTCACCATGAGCGTCATCTTCATTGTCGTCTGCCAGCGGGGAGACACGGTGTTCCGTGTTAATTAAAGACCAAAG