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Detailed information on CNT30380125


BLAST search results

BLAST vs Swiss-Prot:
sp|P35450|EFGC_PEA, E-value = 8e-09

BLAST vs NONCODE:
NONMEST004097, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546688Manihot esculentaIpomoea triloba35.8610090.7430forward
CNT30698284Manihot esculentaQuercus lobata11.2647.293.33135forward
CNT30629687Manihot esculentaVigna unguiculata26.6916.285.62320forward
CNT30637620Manihot esculentaCapsicum annuum23.5214.6990.78282forward
CNT3093993Manihot esculentaSolanum tuberosum38.788.8989.87464forward
CNT30562819Manihot esculentaActinidia chinensis27.6165.6793.05331forward
CNT30608684Manihot esculentaGossypium raimondii34.0396.9191.18408forward
CNT30689637Manihot esculentaTriticum urartu38.7847.6489.89465forward
CNT30721809Manihot esculentaTriticum spelta21.2716.991.76255forward
CNT30480842Manihot esculentaArabidopsis halleri23.658.1188.69283forward
CNT30423787Manihot esculentaPapaver somniferum38.7824.9689.25465forward
CNT30101083Manihot esculentaOryza rufipogon37.7884.8388.96453forward
CNT30726347Manihot esculentaLupinus angustifolius37.293.591.03446forward

Expression of CNT30380125

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPRSRSALSLSRTQAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (39 aa)
QPFQASGHQPVGPKVTTIPGFRTPVSTRPTGTVPIPPIL*

>peptide 3 (51 aa)
TTIPGFRTPTSRSEGHNHSRLQDTSFHTTHWDSSNTTNLVNILKWETERLV*

>peptide 4 (42 aa)
MPRSINDSAVVLGGLKLPQGNINGDTTFTLSLELVKNPGILE*

Sequence

>CNT30380125
CACAACCATTCCAGGCTTCAGGACACCAACCAGTAGGTCCGAAGGTCACAACCATTCCAGGCTTCAGGACACCAGTTTCCACACGACCCACTGGGACAGT
TCCAATACCACCAATCTTGTAAACATCCTGAAGTGGGAGACGGAGAGGCTTGTCTGAGGGCCTCTTGGGCTCCTGGATCTGGTCCAGAGCTTCAAGAAGA
GTTGGGCCCTTGTACCAGTCAAGGTTGGTTGATCTCTCAATCATATTGTCACCTTCAAACCCAGAGATGGGAACAAAAGGAATCTTATCAGGGTTGTATC
CAACCTTCTTGAGGTAGGAGGAGACTTCCTTGACAATTTCATCGTACCTAGCCTTGGAGTACTTGGGGGTGGTGGCATCCATCTACAGAGACATTAAAAA
ACAATAAGTGCGACAAAAAATTGATCTCAAAGCACATATACATATAGAACTTAACAATACTAATACTTATATTTCCCAAATAACAGCAACCTCATATCAA
TATAACCTCTCTCCTGGACAGATAAGATCCAAGCATATCATTTACAATCAGCCATCGTGATCCTAAACAACTAGAATTTTACAGCCAACAATCACTCAAC
CTCTCAGCATTGCATTCTTAACACATTGCTCCTATCTTTTCATTTTTCAACAAAATTATGAATAGGAGGATAACATTCAGCACCAACACGAATGCACAGC
CAAAGCCAGCAAGTAATTAGGTTGTTACCTTGTTGCAGCAGCAAATCATTTGTTTGACACCAAGGGTAAAAGCAAGAAGGGCGTGCTCACGGGTTTGACC
ATCCTTGGAAATACCAGCTTCAAAACCACCAGTGGTGGAATCAATAATAAGGACAGCACAGTCAGCCTGTGAGGTACCAGTAATCATATTCTTAATAAAG
TCACGATGCCCAGGAGCATCAATGACAGTGCAGTAGTACTTGGTGGTCTCAAACTTCCACAAGGCAATATCAATGGTGATACCACGTTCACGCTCAGCCT
TGAGCTTGTCAAGAACCCAGGCATACTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCAAACCTCTCAATCACACGCTTGTCAATACCTCCAAG
CTTGTAGATGAGATGGCCAGTGGTGGTGGACTTGCCAGAGTCGACATGGCCAATGACCACAATGTTGATGTGAACCTTCTCCTTACCCATTGTTAGTTT