« Back to Manihot esculenta search


Detailed information on CNT30380073


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670523Manihot esculentaSetaria viridis14.6342.389.4151forward
CNT30702258Manihot esculentaQuercus lobata2554.8986.05258forward
CNT30375086Manihot esculentaArabidopsis thaliana23.8434.3183.74246forward
CNT3072357Manihot esculentaQuercus suber2525.1286.05258forward
CNT30505192Manihot esculentaNicotiana attenuata16.0929.3884.94166forward
CNT3076654Manihot esculentaBrassica juncea17.1537.988.14177forward
CNT30259492Manihot esculentaBrassica rapa13.1838.7586.76136forward
CNT30720770Manihot esculentaTriticum spelta12.6921.8387.79131forward
CNT30365203Manihot esculentaSorghum bicolor15.674.8883.23161forward
CNT30355186Manihot esculentaLactuca sativa17.832584.78184forward

Expression of CNT30380073

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLFKTKQAIPGLKLNQQTKKPFQFSKMNS*

>peptide 2 (67 aa)
MTSVALIKPSGREWRHPYKLSNCNKNSSIHECSSITSQRNYTGSDIYISIWHSSTAVSVFELTAKCL*

>peptide 3 (41 aa)
VKSSNLLIKVLRQNIHFLLIFASSLLPPQLKLCNHLIGERA*

>peptide 4 (90 aa)
MRRPSANTMMPVLVSGNTHLSVWGLMVTRFTPGHYHTSPSLLQGGSTALAHITITADNSNLASNHDISSPHQTIRERVAASIQVIKLQQK*

Sequence

>CNT30380073
GTGAAGAGCAGCAACCTTCTCATCAAGGTGCTTAGGCAAAACATACACTTTCTTCTCATATTTGCCAGTTCCCTTCTCCCTCCACAACTCAAGCTGTGCA
ATCACCTGATTGGTGAAAGAGCATGACATCACGAAGCTGGGGTGACCAGTGGCACAACCCAAATTCATGAGACGCCCCTCAGCCAACACAATGATGCCTG
TTTTGGTCTCAGGGAACACCCACCTATCAGTCTGGGGCTTGATGGTGACGCGCTTCACGCCAGGTCACTATCACACGAGCCCCAGCCTGCTTCAAGGCGG
CAGCACAGCCCTTGCCCACATCACCATAACCGCAGACAACAGCAACCTTGCCAGCAATCATGACATCAGTAGCCCTCATCAAACCATCAGGGAGAGAGTG
GCGGCATCCATACAAGTTATCAAACTGCAACAAAAATAGTAGTATCCATGAGTGTTCGTCAATAACAAGTCAAAGGAATTACACCGGATCAGATATTTAT
ATTTCCATATGGCATTCATCAACTGCAGTTTCTGTATTTGAATTGACAGCCAAATGCCTATGAATACTAGCTGATAAGTGACAATTGGTCATCTAACATG
ACAGAAGAATAAGGCAGCCAACAGCACCAAGTGAATAAATTTTCGATTGATAACTCATTTTGGCCAATTAGGTTTGAAAAAATTGATGACATTCAGACGA
AACTAAGTTGCATTCTATCAAAATAGACCATAGCTTATGAATACAGATCTGCACTAAAACTCGGTCTAAATCATAAGTGAACTCGTTTTTTCAAACGATT
AAACAACAGATTAATGCTCTTTAAAACCAAGCAAGCAATACCAGGCCTAAAATTAAATCAGCAAACAAAGAAACCTTTCCAGTTCAGCAAGATGAATAGC
TAATCAAATTAACCTAATCCATACCCATAAAGCAAATAATAGTAGAGAAACTGAAACACAGAGCAAACAATTTTAGCAAAAACGTAGTAGATCTAAGCCG
CGGGGACCCAGATCCAAGCCAGATCTAAAGCT