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Detailed information on CNT30380061


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 4e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317005Manihot esculentaCorylus avellana25.993585.7198forward
CNT30630708Manihot esculentaVigna unguiculata54.9180.5483.09207forward
CNT30503251Manihot esculentaNicotiana attenuata46.9520.3483.62177forward
CNT30711848Manihot esculentaGlycine max56.7643.2384.11214forward
CNT30544306Manihot esculentaBrassica napus37.1440.1186.43140forward
CNT3061832Manihot esculentaArabidopsis lyrata25.4631.2782.2996forward
CNT3077810Manihot esculentaBrassica juncea29.7117.9884.82112forward
CNT30264591Manihot esculentaBrassica rapa22.8112.9384.8886forward
CNT30210701Manihot esculentaHelianthus annuus27.3211.7483.5103forward
CNT30479805Manihot esculentaArabidopsis halleri45.0955.9282.94170forward
CNT30356872Manihot esculentaLactuca sativa23.6115.3485.3989forward
CNT30322408Manihot esculentaAsparagus officinalis47.4820.679.89179forward

Expression of CNT30380061

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLGNRIPTSQTLLVFHSLSLSPSISLLGLDHLPTPVGQMDHLGEACPRN

Sequence

>CNT30380061
TTGTGGAATATGAGGCCGTAATTAATTAATTGAAAAACATCTGTAATAATGAAATAAAAAGATATATCAAGAGCAAGGATCACTAATGTAAATTGGGTTG
AAAAGTCTCATAAAAGAGATGGGTAGGAGCTCTCTCAGCTGAGCCAGCAAGAACAGTAAGCAAATTGTTGCCAAAAGGATCACTGAGGTGTTTGGAGAGG
TTCTCAACAGGACCTTCTCCAGTTACATATGCTTGGAAATAGAATCCCAACATCGCAAACATTGCTAGTCTTCCATTCTTTATCTCTTTCACCTTCAATA
TCGCTGCTTGGTCTGGATCATTTGCCAACCCCAGTGGGTCAAATGGACCACCTGGGTGAAGCTTGTCCTCGAAATCC