Detailed information on CNT3037990


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 4e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272384Cucumis meloChenopodium quinoa87.2524.3283.46260forward
CNT30402985Cucumis meloBeta vulgaris26.8522.6686.2580forward
CNT30631438Cucumis meloVigna unguiculata38.5917.3788.7115forward
CNT30709232Cucumis meloGlycine max94.337.6786.12281forward
CNT30300179Cucumis meloTriticum aestivum55.0314.0581.71164forward
CNT30393350Cucumis meloTriticum turgidum55.0316.3881.1164forward
CNT30171914Cucumis meloTrifolium pratense46.9816.9789.29140forward
CNT30144776Cucumis meloMedicago truncatula95.6421.7181.05285forward
CNT30311864Cucumis meloCamelina sativa32.8920.2582.6598forward
CNT3062430Cucumis meloArabidopsis lyrata85.2322.0381.1254forward
CNT3017684Cucumis meloZea mays93.2967.4880.94278forward
CNT30685087Cucumis meloTriticum urartu52.6829.4680.25157forward
CNT3053264Cucumis meloAmborella trichopoda59.0628.1284.66176forward
CNT30116632Cucumis meloOryza nivara29.5322.9885.2388forward

Expression of CNT3037990

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LDLIKEHYCVWTTSNSLCQLTTFRVTNITRRGTNELGNCMPFHKFTHIKANHCFFRPKIVCSQCFR*

>peptide 2 (33 aa)
RSHQRALLCMDDVEQPLSIDHLPCNQHNQEGNQ*

Sequence

>CNT3037990
CTCGATCTCATCAAAGAGCACTACTGTGTATGGACGACGTCGAACAGCCTCTGTCAATTGACCACCTTCCGTGTAACCAACATAACCAGGAGGGGAACCA
ATGAGCTTGGAAACTGTATGCCTTTCCATAAATTCACTCATATCAAGGCGAATCATTGCTTCTTCAGACCCAAAATAGTATGCAGCCAATGCTTTCGCTA
ACTCAGATTTACCAACACCAGTTGGACCAGAAAATATAAAGCTAGCAATTGGACGATTGGGATTCTTCAAACCAACACGAGCTCGGGTTGGCATCTTG