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Detailed information on CNT30379825


BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 2e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512612Manihot esculentaJuglans regia31.999.4981.58190forward
CNT30707566Manihot esculentaPrunus avium25.087.2683.22149forward

Expression of CNT30379825

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MERLVIAKFTTNMSSLVVKMGKVQPSKFSP*

Sequence

>CNT30379825
CTCTTCCTTATATCTAGGACTTAACCCTAATTGCAGCTCTGCAAATGCCAAAAACTTCATTGCAGAAGCTACTTAGGACACCAAAATAAACCTAAAAAGA
GAAACTGACCATAAAGATTACATAGTGATTGAAACTTAGAGAGCTGCCCAGTCTATCTCTGCTGATGGGTACTTTTCCAAACTGAAATTCTCGACTGAGG
TGAAGAAGAACCAGCTGATGACTCATCAGATGAAGCTGGTGCTGGTGATGCTGATGAAATTTCCACTTTAGAATCCTCAACTCCATAAGTATCGAACTCC
CTTTTCAATTCACCTTTCATAGAGTAATCATCTTCCTTCTTCGCCTGTGAAGAAGCTGATAGAATTGTCTTAGAATCATCAGCGTAAATCCGTTCCCCTG
TTTTCCCCTGTTTCTGCGAGTTAGCTAAGCTTTCACAAATAGCTTGTAACTTTGCATCAACAGAGGAATGGAGAGGCTTGTAATCGCCAAATTCACCACA
AACATGAGCTCCTTGGTGGTGAAGATGGGGAAAGTTCAGCCTAGCAAATTCTCCCCTTAGCTTATAAGCTGCCTTGTCATAAGCCAAGGCAGCC