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Detailed information on CNT30379550


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406248Manihot esculentaBeta vulgaris11.8326.1990.9166forward

Expression of CNT30379550

Peptides detected in this lncRNA

>peptide 1 (57 aa)
FPVSIQKPSASCSSLDPVSLCTVLPKQTSQDPQKIEAESKSGGFYFPKSGGVERLQA*

>peptide 2 (73 aa)
SQSPSKNRLHPVLLWILCLCAQCSLNKLAKTHKKLKLNQNLGDFTFLNQVELNVFKLEITIFNRFSSFYWVSS*

Sequence

>CNT30379550
TTTCCCAGTCTCCATCCAAAAACCGTCTGCATCCTGTTCTTCTTTGGATCCTGTGTCTTTGTGCACAGTGCTCCCTAAACAAACTAGCCAAGACCCACAA
AAAATTGAAGCTGAATCAAAATCTGGGGGATTTTACTTTCCTAAATCAGGTGGAGTTGAACGTCTTCAAGCTTGAAATTACCATCTTCAATCGATTCTCT
TCTTTTTATTGGGTTTCGTCTTAAGCTGCTGAAAGGTGGTTCTTTTTATAAGAAGATTCGATTTTGCAAGCATCTATAACTGAACTGTTCCTCTCTGTTA
GATCCAAGTCATACCATTGGAATCAGACAAAATCTTGTTGAATCAACATAATCAAGCTTTTAGGAATTGGGAGCATTGGAGAAGAATACAGGGAATCAAG
GGGTTATTTCTTGGTTTCTTCAAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAATAACGCTCGTAAGAAGTCCTATTGAAACCAAGAA
ATATCAACCTGCACACATATATACAACTTTATCTCTTCTTGTTATTATTGTTATCTTG