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Detailed information on CNT30379505


BLAST search results

BLAST vs Swiss-Prot:
sp|P30078|CHSY_MALDO, E-value = 3e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524977Manihot esculentaPhaseolus vulgaris29.0431.2182.04167forward
CNT30628728Manihot esculentaVigna unguiculata29.7417.3481.87171forward
CNT30196025Manihot esculentaPisum sativum29.7415.1683.63171forward
CNT30712527Manihot esculentaGlycine max21.2226.1285.25122forward
CNT3087836Manihot esculentaVigna radiata28.732.180.61165forward
CNT30171603Manihot esculentaTrifolium pratense29.7432.4584.21171forward
CNT30143557Manihot esculentaMedicago truncatula28.715.7684.24165forward
CNT3074040Manihot esculentaBrassica juncea18.7824.4385.19108forward
CNT30573629Manihot esculentaVitis vinifera33.2211.982.72191forward
CNT30119447Manihot esculentaCitrus clementina32.8724.4880.95189forward

Expression of CNT30379505

Peptides detected in this lncRNA

>peptide 1 (93 aa)
FIEFLPHVETLCSTTVSTVRPGPKPNKTPHSNPSPVVTFPSSKDFFLISSKINNTQALDMFPYSLRTCLVALIFSGFKLSFASTWSRMAGPPG*

>peptide 2 (32 aa)
MEFQSLIPIGLNASTRLFSIFFEIKLGTSFSK*

>peptide 3 (37 aa)
DSLSSCLMWRHCAARQFPPLDQAQNRTKHPTLILLRW*

Sequence

>CNT30379505
GATTCATTGAGTTCCTGCCTCATGTGGAGACACTGTGCAGCACGACAGTTTCCACCGTTAGACCAGGCCCAAAACCGAACAAAACACCCCACTCTAATCC
TTCTCCGGTGGTGACTTTCCCTTCCTCTAAAGACTTCTTTCTCATCTCATCCAAGATAAACAACACACAAGCACTTGACATGTTTCCATACTCACTTAGA
ACATGCCTGGTTGCTCTCATCTTTTCAGGTTTTAAACTAAGTTTTGCTTCAACCTGGTCGAGAATGGCTGGACCACCTGGGTGAGCTATCCAAAATATGG
AGTTCCAATCGCTGATACCAATTGGCTTGAATGCTTCCACCAGGCTTTTCTCTATATTCTTTGAAATCAAACTTGGAACGTCTTTTAGTAAGTGAAAGGT
GAGACCCACTTCACGTAAGTGTCCATCAATGGCTCCATCAGAGCCAAGGAGCTTAGTAAGCTGGTAGTCGCAACCAGGCATGTCGACACCAGAGGTGGTG
CAGAAAATAAGATGGGTGATCTTAGACTTAGGTTGACCCCATTCTTTGATAGCTTTAGTTGCTGCTTCCTTCCCC