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Detailed information on CNT30379324


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 1e-104

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517675Manihot esculentaJuglans regia25.2640.490.16244forward
CNT30618173Manihot esculentaSesamum indicum29.1935.5687.59282forward
CNT30403515Manihot esculentaBeta vulgaris24.3391.4490.21235forward
CNT30237104Manihot esculentaBrassica oleracea20.1960.1984.1195forward
CNT30611949Manihot esculentaArabis alpina12.2234.186.44118forward
CNT30606894Manihot esculentaGossypium raimondii22.4659.4592.17217forward
CNT30204030Manihot esculentaHelianthus annuus23.0853.7388.34223forward
CNT30716286Manihot esculentaMalus domestica golden25.0518.5385.95242forward
CNT30619808Manihot esculentaCajanus cajan14.824.0385.31143forward
CNT30147962Manihot esculentaBrachypodium distachyon20.9159.5986.14202forward
CNT30575645Manihot esculentaOryza barthii24.6428.0786.55238forward

Expression of CNT30379324

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTRITLGHHRRGLKSTVCDFSNRELFMLKGHCCTAQQQMWRPGEMGRQ*

>peptide 2 (35 aa)
MNKTRGKKQHASYAKEIKHHRNFLIFFIFTIIALS*

>peptide 3 (32 aa)
MVRLVLIVATAAFTSLGTTSPRYIKQQAMYLP*

Sequence

>CNT30379324
GGAGAATAGAAATTGGGAAATATTGATCTAAAATTTAAATTTAAGGCTAAACAGAAATAGCATTCAATACTCGGACAACAGTACAATTCAACACAGAATT
AAGCATGCCTGAAGCAAGATAGCTTCAAATAATTGCATACACTCAAAATGAACAAAACACGGGGAAAAAAGCAGCACGCATCATATGCTAAAGAGATAAA
GCACCACAGGAACTTCTTAATATTCTTCATCTTCACCATCATCGCCCTCAGCTGATTCAGCACCAACCTCTTCATAATCCTTTTCAAGGGCAGCAAGATC
CTCACGAGCCTCAGAGAACTCTCCTTCCTCCATACCCTCACCCACATACCAGTGCACAAAAGCACGCTTGGCATACATGAGGTCAAACTTGTGGTCAATT
CTTGAGAACACCTCAGCAACACTGGTTGAGTTGGAGATCATGCACACAGCCCTCTGAACCTTGGCAAGGTCACCGCCAGGAACAACAGTGGGTGGCTGGT
AGTTGATACCGCACTTGAATCCAGTTGGGCACCAGTCAACAAACTGAATGGTGCGCTTGGTCTTAATAGTGGCAACTGCAGCATTCACATCCTTGGGCAC
AACATCACCACGGTACATCAAGCAGCAGGCCATGTATTTACCATGACGAGGATCACACTTGGCCATCATAGAAGAGGGCTCAAAAGCACTGTTTGTGATT
TCAGCAACAGAGAGTTGTTCATGTTGAAAGGACACTGTTGTACGGCTCAACAACAGATGTGGAGACCTGGGGAGATGGGTAGACAGTGAAACCCAACTTG
GATTTCTTTCCATAATCAACAGACAAACGCTCCAAGAGGAGGGATCCAAGACCAGATCCAGTACCACCACCGACAGCATTGAATACAAGGAATCCTTGGA
GACCAGTGCAGTTATCAGCAAGCTTTCTGATGCGGTCCAGGCAGAGATCAACAATTTCCTTGCCAA