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Detailed information on CNT30379273


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHE7|RUB1_ARATH, E-value = 5e-61

BLAST vs NONCODE:
NONGMAT000502, E-value = 3e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700154Manihot esculentaQuercus lobata67.539.6786.65457forward
CNT3019830Manihot esculentaCitrullus lanatus68.3941.8285.1463forward
CNT30607179Manihot esculentaGossypium raimondii67.3673.7984.65456forward
CNT30203004Manihot esculentaHelianthus annuus67.3639.8684.87456forward

Expression of CNT30379273

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVSELSTSRVMVFPVRVFTKICILETGKESRKVF*

>peptide 2 (56 aa)
MPSLSWILALTLSIVSELSTSRVIVLPVRGFDKDLHASTETEDEMESRFLLDVVVG*

>peptide 3 (91 aa)
MLRLNTRTQTASNLNDFQSETTTETKHKVECRLLLDVIIGKGSAIFKLFSGEDQPLLIRWDAFLVLDLGLDVINCVGTLHLKSDSLAGEGF*

Sequence

>CNT30379273
GGCAAGTAGGAAATAGCTTACATTATAATTAAGAAACTTGAATTATTAATTAAGCACACATAATATATCAGAAGCCATATGCTTAGGCTTAATACTCGGA
CACAAACTGCATCAAACTTGAATGATTTTCAATCAGAAACCACCACGGAGACGAAGCACAAGGTGGAGTGTCGACTCCTTCTGGATGTTATAATCGGCAA
GGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAAT
TGTGTCGGAACTCTCCACCTCAAGAGTGATAGTCTTGCCGGTGAGGGGTTTTGACAAAGATCTGCATGCCTCCACGGAGACGGAGGACGAGATGGAGAGT
CGATTCCTTCTGGATGTTGTAGTCGGCTAGTGTACGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCGGGTGGTATTCCTTCCTTG
TCTTGGATCTTGGCCTTAACGTTATCGATGGTATCAGAGCTCTCGACCTCGAGAGTAATGGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCATACTGG
AAACTGGAAAGGAATCGAGAAAGGTGTTTTAGAAAAGTCGGAGTGACCAAAGGATTTAGGATGATGAGATTCAGATG