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Detailed information on CNT30379140


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 8e-105

BLAST vs NONCODE:
NONMEST000006, E-value = 2e-148

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Manihot esculentaSetaria viridis31.6342.1683.46266forward
CNT3019808Manihot esculentaCitrullus lanatus35.6744.7886300forward
CNT30526134Manihot esculentaPhaseolus vulgaris58.6277.3984.99493forward
CNT30630919Manihot esculentaVigna unguiculata58.6237.0185.8493forward
CNT30712340Manihot esculentaGlycine max18.6727.387.26157forward
CNT3043869Manihot esculentaPrunus dulcis16.8828.0688.03142forward
CNT30636154Manihot esculentaCapsicum annuum27.5950.2285.34232forward
CNT30187977Manihot esculentaSecale cereale36.1542.1184.87304forward
CNT30566784Manihot esculentaActinidia chinensis3943.1684.76328forward
CNT30510227Manihot esculentaSolanum lycopersicum57.0740.9984.17480forward
CNT30145670Manihot esculentaMedicago truncatula18.4338.0888.39155forward
CNT30314068Manihot esculentaCamelina sativa55.6530.8785.9468forward
CNT3082269Manihot esculentaBrassica juncea41.9754.4884.14353forward
CNT30606420Manihot esculentaGossypium raimondii38.2956.3987.27322forward
CNT30688537Manihot esculentaTriticum urartu9.0432.988.1676forward
CNT30362691Manihot esculentaSorghum bicolor47.6840.5583.04401forward
CNT30551470Manihot esculentaOryza brachyantha42.5782.383.52358forward

Expression of CNT30379140

Peptides detected in this lncRNA

>peptide 1 (35 aa)
AKPYCIKEIIKTKNREPSNQEVQNTIQISQERCNS*

>peptide 2 (52 aa)
MLLPIIGKALVESSIFFLRDLLWLPHPDWFLFVHQRPLMGHLLDLLLLLLFFF

>peptide 3 (29 aa)
MPRRICCNLPCFQQSQRRVQCTSSPSSYG*

>peptide 4 (35 aa)
MSASPSPASSSMLNPSFNILWILLPKVFGFLENAS*

>peptide 5 (57 aa)
MHFFTKFLRITFRILFCCSISLEMLRGRSSESTIPFTNPRYSGINSSQLSMMKTRLT*

Sequence

>CNT30379140
GCTAAACCTTACTGCATTAAGGAAATAATCAAAACCAAAAATAGAGAACCATCTAACCAGGAAGTTCAAAACACTATCCAAATATCTCAGGAACGATGTA
ATAGCTAACATACTTAAAACAGTACCACAACACTAGTAAGAAGTTAAAATCACAAGTGATAGGCTAAGGGCTTAATCAACTTCCTCCATCTTGGAACCCT
CAGCATCGGCATCAGCATCCTCCAAGGCCGGCATGTCAGCATCTCCCTCACCAGCATCCTCATCGATGCTCAATCCAAGCTTCAACATCCTGTGGATCCT
GTTACCGAAGGTATTTGGGTTCTTAGAGAATGCCTCGTAGAATTTGTTGTAATCTTCCTTGTTTTCAGCAATCTCAAAGAAGAGTTCAATGCACTTCTTC
ACCAAGTTCTTACGGATAACTTTCAGGATCTTGTTCTGTTGCAGCATCTCTCTTGAGATGTTGAGGGGAAGGTCCTCAGAATCAACAATACCCTTCACAA
ATCCAAGATACTCAGGAATTAACTCCTCACAATTGTCCATGATGAAAACACGTCTCACATAGAGCTTGATGTTATTGGGCTTCTTCCTTGTGTCAAACAG
ATCAAAAGGTGCCCTCTTAGGAGCATAGAGGATAGCCTTGAACTCAAGTTGGCCTTCAACTGAGAAGTGCTTAACAGCCAAATGCTCCTCCCAATCATTG
GTAAGGCTCTTGTAGAAAGCAGCATATTCTTCCTTAGAGATCTCCTCTGGCTTCCTCATCCAGATTGGTTTCTGTTTGTTCACCAACGACCACTCATGGG
ACACCTCCTTGATCTTCTTCTTCTTCTTCTCTTCTTTTTCT