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Detailed information on CNT30379122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001412, E-value = 7e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043899Manihot esculentaPrunus dulcis38.5834.4288.17169forward
CNT30635894Manihot esculentaCapsicum annuum37.6729.3182.42165forward
CNT30187559Manihot esculentaSecale cereale26.4817.3983.62116forward
CNT30224390Manihot esculentaHordeum vulgare21.4617.0984.0494forward
CNT30562110Manihot esculentaActinidia chinensis41.5522.0382.97182forward
CNT30441217Manihot esculentaAegilops tauschii49.7729.3481.19218forward
CNT30250601Manihot esculentaAvena sativa2121.6584.7892forward
CNT30665102Manihot esculentaTriticum dicoccoides31.2833.0981.75137forward
CNT3012962Manihot esculentaZea mays31.5121.280.43138forward
CNT30227528Manihot esculentaAnanas comosus32.6519.6788.81143forward
CNT30107297Manihot esculentaOryza longistaminata32.6531.8583.92143forward
CNT30149846Manihot esculentaBrachypodium distachyon26.4826.1986.21116forward
CNT30584451Manihot esculentaEchinochloa crusgalli36.7630.0481.99161forward
CNT30724273Manihot esculentaLupinus angustifolius54.7941.6785240forward

Expression of CNT30379122

Peptides detected in this lncRNA

>peptide 1 (64 aa)
GLINFLHLGTLSIGISILQGRHVSISLTSILIDAQSKLQHPVDPVTEGIWVIKAESRCEQSSLE*

>peptide 2 (54 aa)
GLNQLPPSWNPQHRHQHPPRPACQHLPHQHPHRCSIQASTSCGSCYRRYLGHQG*

>peptide 3 (90 aa)
MSASPSPASSSMLNPSFNILWILLPKVFGSSRLNPDVSRAVSNSSSTRSFTDLSFLSASALFLSSSMMGFSGLISIVFLLDMYPAMLLTS*

Sequence

>CNT30379122
GGGCTTAATCAACTTCCTCCATCTTGGAACCCTCAGCATCGGCATCAGCATCCTCCAAGGCCGGCATGTCAGCATCTCCCTCACCAGCATCCTCATCGAT
GCTCAATCCAAGCTTCAACATCCTGTGGATCCTGTTACCGAAGGTATTTGGGTCATCAAGGCTGAATCCAGATGTGAGCAGAGCAGTCTCGAATAGTAGC
AGCACAAGATCCTTCACCGACTTGTCGTTCTTGTCAGCATCAGCTCTCTTTCTTAGTTCCTCCATGATGGGATTTTCTGGATTGATCTCCATTGTCTTTT
TGCTTGACATGTACCCAGCCATGCTGCTGACTTCATAGCCCTTCTTCTTCAACTTCTCAAGGAATGGGGAGTTTTCAACTGCCTTCTTGCTTTCACCAGT
GATGTAGTAGATATCATTTTGGCCCTCCTTCATTCTGG