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Detailed information on CNT30379120


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LUM4|RAP22_ARATH, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516842Manihot esculentaJuglans regia20.0230.286.59164forward
CNT30170287Manihot esculentaPistacia vera24.0521.1186.8197forward
CNT30232688Manihot esculentaAnanas comosus12.730.8685.58104forward
CNT30356457Manihot esculentaLactuca sativa16.2424.3180.45133forward
CNT3038331Manihot esculentaCucumis melo18.5630.0482.24152forward
CNT30723266Manihot esculentaLupinus angustifolius16.3620.0682.09134forward

Expression of CNT30379120

Peptides detected in this lncRNA

>peptide 1 (47 aa)
PVNYSANLARIPDNNLITKQLLRKSLQSDRGDCRSNTIVIKVPEIPN*

>peptide 2 (89 aa)
MGRQIKVILGSGVHVIFIWEINFGFLAANFAGLSIVGSSSFFGGVEGAKPNADSFPWIANLSSPFAPGALPDTSIQVLPLPLGGGLIHTI

Sequence

>CNT30379120
CCTGTAAATTACAGCGCCAACCTCGCCCGAATACCAGATAACAACCTAATAACAAAACAATTGCTCCGCAAGTCGCTACAGAGCGACAGAGGTGACTGCC
GCAGCAATACCATCGTCATCAAAGTTCCAGAGATTCCCAACTAGGCTTTCCTGAGTGGCATTCACCGCCGGCGACTGTCCATCCAAATAAGGAATCTGAT
AGAATTTCATGTAATTTTCATAAGCCATTAGCTCCTCCGACAGCTTCTGCACTTCGCTTTCTTGAAGCTGAGATTTTCCGGCCACTATCACCACCTCCCC
ACTGTTCATCTTCCCTGCCTCCATTTTCTCCTCTTCTTGTTTCACTTTAACTTCACTTATGTAATTATTGTTGCTTATTGAGTAGGCTTCCTCCTCTGAA
CCAGACCCAGAATTCTCCTCGCCAGAAACAAAAATAGAAGCGTGGGATCCAATACTGTTTAAATCGTAACCGAACCCAAATTCATAACTTTTGGGCGGAT
TGCTGAAATTGCAAGTGAGGGGTTGATACATGGAGGGATTGGGATTCCGATGGGGAGGCAGATTAAGGTGATTTTGGGAAGTGGAGTACACGTCATCTTC
ATTTGGGAAATTAACTTTGGCTTTCTTGCCGCGAATTTTGCGGGCCTCTCTATCGTAGGCTCGAGCAGCTTCTTCGGCGGTGTTGAAGGTGCCAAGCCAA
ACGCGGACTCCTTTCCTTGGATCGCGAATCTCAGCAGCCCATTTGCCCCAGGGGCGTTGCCTGATACCTCTATACAAGTTCTTCCTCTGCCTCTTGGCGG
GGGTCTTATTCACACGATC