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Detailed information on CNT30379051


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 8e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628928Manihot esculentaVigna unguiculata53.8775.3580.85376forward
CNT30710467Manihot esculentaGlycine max46.745.0981.29326forward
CNT3091613Manihot esculentaSolanum tuberosum5147.0982.58356forward
CNT30400271Manihot esculentaTriticum turgidum59.684.0478.85416forward
CNT30508904Manihot esculentaSolanum lycopersicum5157.6182.02356forward
CNT30687113Manihot esculentaTriticum urartu47.7162.5980.78333forward
CNT30476898Manihot esculentaArabidopsis halleri52.7279.8380.43368forward
CNT30354818Manihot esculentaLactuca sativa27.7937.0981.96194forward
CNT30642025Manihot esculentaCannabis sativa55.7375.8381.23389forward
CNT3035176Manihot esculentaCucumis melo53.1567.4582.48371forward
CNT30150463Manihot esculentaBrachypodium distachyon51.1540.6179.55357forward
CNT30551544Manihot esculentaOryza brachyantha51.5851.880.56360forward

Expression of CNT30379051

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLGYSLVRLDCNQGMSGYKQVKLDCMMEMWGCKKARLGYRKVTLGYRKEKLGCMMVR*

Sequence

>CNT30379051
CGGACTGTATTTAGCTGACTGAGGATTGTAACTGGGTGAGGTCGGGCTATAGCTTGGCGATGTTGGGCTATAGCTTGGTGAGGTTGGACTGTAACCAGGG
GATGTCGGGCTATAAGCAGGTGAAGTTGGACTGTATGATGGAGATGTGGGGCTGTAAGAAGGCGAGGTTGGGCTATAGGAAGGTGACGTTGGGCTATAGG
AAGGAGAAGTTGGGCTGTATGATGGTGAGGTAGGACTGTATGCAGGCGAAGTGGGACTATATGCAGGTGAAGTGGGACTATATACTGGAGATGTAGGGCT
ATAGCTTGGTGAAGTTGGGCTGTAACTGGGAGATGTGGGGCTATAGCTTGGAGAGGTTGGACTATAACTTGGAGATGTTGGGCTATAGCTGGGAGAAGTT
GGGCTGTAACTAGGGGAAGTTGGGGAATACGATGGACTTGTAGGAGAATAGGCAGGACTGGTAGGGCTATAGCCAGGAGAACTAGGGCTATAAGCGAAGA
CTAGGGCTCAGTAAATAACTTGGAGACATCATGCCCTCATGGTAAGGTGTCCCTGAGACTGGGGAACGTGCAGGAGTCATGCCGAAATCCAGGCCATCCA
TATAACTGGGGAGCTGAAGTTCAATGGCATTCTTCAACATTTCATCATTGAGATACAAAGAACAACCTCCTGTGCCAATTGGTGCAAGCTGACCAAGC