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Detailed information on CNT30378978


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 5e-159

BLAST vs NONCODE:
NONSTUT002514, E-value = 5e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631012Manihot esculentaVigna unguiculata56.1550.7183.07644forward
CNT3085816Manihot esculentaVigna radiata30.5154.8682.86350forward
CNT30234848Manihot esculentaBrassica oleracea14.8226.4485.29170forward
CNT30172025Manihot esculentaTrifolium pratense50.1349.8384575forward
CNT30313266Manihot esculentaCamelina sativa20.8439.781.59239forward
CNT30263808Manihot esculentaBrassica rapa12.2130.2485140forward
CNT30612591Manihot esculentaArabis alpina53.4476.8278.96613forward
CNT30605341Manihot esculentaGossypium raimondii44.5546.8486.3511forward
CNT30410959Manihot esculentaPapaver somniferum52.0567.1581.74597forward
CNT30114814Manihot esculentaEutrema salsugineum51.6171.8477.36592forward

Expression of CNT30378978

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MLNLILPSFSRNKVSSICPCIVGHWISQVIKEVLNRSLSSHNSLNEESKHRKHCQASILDLFHLQFCKCIRIIS*

>peptide 2 (58 aa)
MLGGALLTVLRMEKRPPPKEPILRTSSFDCFKAVCPAKAECWIAEVAMSKLLCEEEVSV

Sequence

>CNT30378978
CAGAGGTCAGGCATGAGAATTCTGATCTCATGTTCTGTTGATACAATGTTTTCACTACTAAAACACAAGTAGAGTAATGACGACGTCCACTACAAGAACA
TTTCCAGAAATTTAAAATACTGGTACTGAGATGTTGAACTTGATTCTCCCTTCATTTTCCAGGAACAAAGTTAGTAGCATATGCCCATGCATTGTTGGCC
ACTGGATCAGCCAAGTGATCAAAGAGGTTCTCAATAGGTCCCTTTCCAGTCACAATAGCTTGAACGAAGAATCCAAACATAGAAAACATTGCCAAGCGTC
CATTCTTGATCTCTTTCACCTTCAATTCTGCAAATGCATCAGGATCATCAGCTAGTCCCAGAGGATCAAATGCACCACCAGGGTAAATAGGGTCAAGTCC
TTCCCCAAGTGGTCCTCCACCAACTCTATAGCCTTCAACAAATCCCATTAGCACGACCTGAACAGCCCAGATTGCAAGGATACTCTGAGCATGGATAAGG
TTAGGATTGCCAAGATAATCAAGACCACCTTCTGAAAAGATTTGGGCTCCAGCTTTGAACCAGACTGCCTCGCCAAATTTGACACCATTCTTGGAAAGGA
CTTCAGGGAAGACGCAGCCAAGTGCACCAAGCATAGCCCATCTGCAGTGGATCACTTCAAGCTCACGGTTCTTGGCAAATGTTTCAGGATCTGCAGATAA
ACCAGCAGTGTCCCATCCATAATCACCGGGGAATTCACCAGTAAGGTATGATGGTGTTTGCTCAGAGAACGGACCCAAATACTTGGGACGGTCTGGGCCA
TACCTGTTTTATCAATTACAGTTTATGCCGTTAGATCCCAACACGAATACCCAAATACTTTTGAGATCTACAATTCGTTTTCTCTTCTTCTTCTAATTAT
TTGGCTTAATCCTCATTTGTTAAGAAATTAAGATAATAATAAATTGGTGGTTAAGAATAATAAATACCATATGCTTGGTGGAGCACTCTTGACAGTTCTG
CGCATGGAAAAGCGACCGCCGCCGAAGGAACCAATCTTGCGGACGAGCTCATTTGACTGCTTCAAAGCTGTCTGCCCAGCAAAGGCGGAGTGTTGGATTG
CAGAGGTTGCCATGTCTAAATTACTTTGTGAAGAGGAGGTGTCTGTC