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Detailed information on CNT30378916


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 2e-158

BLAST vs NONCODE:
NONSTUT002514, E-value = 3e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Manihot esculentaJuglans regia3529.785.75449forward
CNT30701229Manihot esculentaQuercus lobata51.4433.9586.67660forward
CNT3077068Manihot esculentaBrassica juncea50.1263.3577.6643forward
CNT30648173Manihot esculentaRosa chinensis50.3537.1983.13646forward
CNT30480205Manihot esculentaArabidopsis halleri38.9766.2378.4500forward
CNT30360562Manihot esculentaLactuca sativa50.3570.9179.88646forward
CNT30119392Manihot esculentaCitrus clementina50.4370.482.07647forward
CNT30112551Manihot esculentaFicus carica37.4177.5480.42480forward

Expression of CNT30378916

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLGGALLTVLRMEKRPPSKEPTLRTSSFDCFRAVCPANAECWIAEVAMSKLLCEEEVSV

>peptide 2 (74 aa)
MLNLILPSFSRNKVSSICPCIVGHWISQVIKEVLNWSLSSYNSLNKEPKHGKHCQASVLNLFHLQFCKCIRIIS*

>peptide 3 (35 aa)
MENIAKRPFLISFTFNSANASGSSANPRGSKAPPG*

>peptide 4 (54 aa)
MHQDHQLTPEGQRHHQGKWGQVLHRVVLHQLYSLQQIPLAQPELPRLQGCSERG*

Sequence

>CNT30378916
TTTGGAACTTGGTTATATTATTGACACATTAATTCCTTTCAAATACAGAGGTCAGGCATGAGAATTCTGATCTCATGTTCTGTTGATACAATGTTTTCAC
TACTAAAACACAAGTAGAGTAATGACGACGTCCACTACAAGAACATTTCCAGAAATTTAAAATACTGGTACTGAGATGTTGAACTTGATTCTCCCTTCAT
TTTCCAGGAACAAAGTTAGTAGCATATGCCCATGCATTGTTGGCCACTGGATCAGCCAAGTGATCAAAGAGGTTCTCAATTGGTCCCTTTCCAGTTACAA
TAGCCTGAACAAAGAACCCAAACATGGAAAACATTGCCAAGCGTCCGTTCTTAATCTCTTTCACCTTCAATTCTGCAAATGCATCAGGATCATCAGCTAA
CCCCAGAGGGTCAAAGGCACCACCAGGGTAAATGGGGTCAAGTCCTTCACCGAGTGGTCCTCCACCAACTCTATAGCCTTCAACAAATCCCATTAGCACA
ACCTGAACTGCCCAGATTGCAAGGATGCTCTGAGCGTGGATAAGGTTAGGGTTGCCAAGATAATCAAGACCGCCTTCTGAAAAGATTTGGGCTCCAGCTT
TGAACCAGACTGCCTCGCCAAATTTGACACCATTCTTGGATAGGATTTCGGGGAAGACGCAGCCAAGTGCACCAAGCATAGCCCATCTGCAGTGGATCAC
CTCAAGCTCACGGTTCTTGGCAAATGTCTCTGGATCTGCAGACAAACCAGCAGTGTCCCATCCATAATCACCGGGGAATTCACCAGTAAGGTATGAGGGA
GTTTGCTCAGAGAATGGACCCAAATATTTTGGGCGGTCTGGACCATACCTGTTTTATGAATTACAGTTAGATATATCCCCAACGCAAAATAGTAGCCGTT
TATTCTCAAAGCAACTTGCATACACGTAACCAAAGCTCTCTCAAGTTTTCTTTGCTTATTTTCTTGGACATCTCCTTAAAAGATAAGATGCCTTTGAGCT
CTACAAATTCGTTTTCTCTTCTTCTTCTTCTAATTATTTGGCTTAATCCCCATTTTTTAAGAAATTAAGATAATAACAATTTGTAATTGAGAATAATAAA
TACCATATGCTTGGTGGAGCACTCTTGACAGTTCTGCGCATGGAAAAGCGACCGCCGTCGAAGGAGCCAACCTTGCGAACGAGCTCATTTGATTGCTTCA
GAGCGGTCTGCCCAGCAAATGCAGAGTGTTGGATTGCAGAGGTTGCCATGTCTAAATTACTTTGTGAAGAGGAGGTGTCTGTC