Detailed information on CNT30378828


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LSY6|U71B6_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONATHT001960, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30478045Arabidopsis thalianaArabidopsis halleri25.8799.7680.62418forward

Expression of CNT30378828

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSTTNPARRGASGRVESTSLATASLTSGFRLWMWESVALSSVGC*

>peptide 2 (46 aa)
MIPFSISSAVTISDLPNKRSPRQCFLISTAKPSSSTISKALNFCSA*

>peptide 3 (52 aa)
MQQWSYWVSTWNVTIGKKRQRLRFQVRNRVYQNALSFSESSRLSYKKSEPLF*

>peptide 4 (48 aa)
MFTEIKQLDNGPLFRPIIQHFQSISLAFSFRPSNILRYVLNKSFQSSF*

>peptide 5 (84 aa)
MLLDLHSQTKLFHHLESVKLLFSVKRPNRHRNTKPQTLQRRIPSAVRNKTSDRRLRQYGHLFSPSDNLSSVSRPIEKPFWENLL*

>peptide 6 (99 aa)
MATCSAHPITFPLLAVRSKNPSGRISSRFVNSPGGSLNIFGDARRRDQRNRWPLRSRANAVSLTCSSLNPPMLPKQRNTTDLGGCSSSHRKISDCFLST*

>peptide 7 (34 aa)
MDVFLELKDMMITVIERLSFLSTSCSAISTVAMR*

>peptide 8 (32 aa)
MVLLGKHVECYHWKETSTLEVPSQEPCLPKCP*

Sequence

>CNT30378828
CCTTGAATCCGGCATAGATCTTTTCATTATTTTCATACATTCACTAAGTTCATACACAAAACTTAAAAATACATGTTCACAGAAATAAAACAGCTTGACA
ATGGCCCATTATTCAGGCCCATTATACAACATTTTCAATCGATTTCCCTAGCTTTCAGTTTCCGACCAAGCAATATTCTCCGTTACGTCTTGAATAAATC
TTTTCAAAGCAGTTTCTGACGATCCACCGTCCATTAAAGCCACGTGGCACTTCTCGCTGATCTCATTCACTCTCTTCCTGACGTCACTGTCTTGCTCCAT
CAAACATATGATTCCTTTCTCAATCTCCTCCGCCGTCACAATCTCCGACCTCCCCAACAAAAGATCTCCTCGCCAATGCTTCTTGATCTCCACAGCCAAA
CCAAGCTCTTCCACCATCTCGAAAGCGTTAAACTTCTGTTCAGCGTAAAGCGGCCAAATCGCCATCGGAACACCAAACCACAAACTCTCCAACGTCGAAT
TCCATCCGCCGTGAGAAACAAAACCTCCGATCGCCGGCTTCGCCAATATGGCCACCTGTTCAGCCCATCCGATAACCTTTCCTCTGTTAGCCGTCCGATC
GAAAAACCCTTCTGGGAGAATCTCCTCTAGGTTTGTGAATTCTCCGGGAGGCTCTCTCAATATATTCGGAGATGCACGACGGAGAGACCAAAGAAACCGG
TGGCCGCTTCGATCGAGAGCTAATGCGGTTTCTCTCACTTGTTCCTCACTGAACCCTCCCATGCTCCCGAAACAGAGGAACACTACAGATCTTGGCGGTT
GCTCGTCTAGCCACCGTAAAATCTCCGATTGCTTCTTGTCCACGTAATCACAATTTACGTTTTTGAGATGCAACAATGGTCCTACTGGGTAAGCACGTGG
AATGTTACCATTGGAAAGAAACGTCAACGCTTGAGGTTCCAAGTCAGGAACCGTGTTTACCAAAATGCCCTTAGTTTCTCTGAATCTTCTCGCTTGAGTT
ACAAAAAAAGTGAGCCACTCTTTTGATTTGAAAATGTAAGGAAGACATTTCAACGGATAAGGACTAGTCAAACTCGGAACCACCAACTCTACGTCAGAGT
CTTCTAATTCGCTCATGTCATAGATATCCTCTGCATCGTACATGAACTGAATGTGAAGCAAAAGTCCAAGAAATCCAGCGTTAGAGGTGTAAAACAAGTA
ACTAGGGACGCCAAATTCGTTAGCGACATCGATCATCGACGTGCAGTACATGTCAACAACGAATCCCGCAAGACGAGGCGCGTCTGGTAGAGTGGAATCT
ACGAGTTTAGCAACCGCGTCTCTCACCAGTGGCTTTAGACTTTGGATGTGGGAATCAGTTGCTTTGAGCTCCGTTGGTTGTTGATCTCCTCCGGAGATTA
TTTCGTACCGGAGGCGGTTGTTGGATGTAAGAGAGGTGATCATGGATGTATTTTTAGAACTAAAAGATATGATGATTACGGTGATAGAGAGGTTGTCGTT
TTTATCAACTAGTTGCTCCGCCATCTCTACCGTCGCCATGAGATGACTAATTGCCGGAGAGGGAATGAATACTAGCTCTATTTTCATTTCTTTTATTCTC
TCTACTTGTTTTCCCA