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Detailed information on CNT30378684


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST005600, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530127Arabidopsis thalianaEucalyptus grandis21.2667.7193.52216forward
CNT3089382Arabidopsis thalianaVigna radiata42.2294.0890.44429forward
CNT30145113Arabidopsis thalianaMedicago truncatula31.196.3493.99316forward
CNT30441777Arabidopsis thalianaAegilops tauschii44.5980.4692.05453forward
CNT3059907Arabidopsis thalianaArabidopsis lyrata21.5643.0397.72219forward
CNT30606924Arabidopsis thalianaGossypium raimondii26.0832.494.72265forward
CNT3067750Arabidopsis thalianaLeersia perrieri25.295.8890.23256forward
CNT30655381Arabidopsis thalianaRosa chinensis33.9664.4993.33345forward
CNT30627899Arabidopsis thalianaDaucus carota52.0741.6993.95529forward
CNT30683192Arabidopsis thalianaTriticum urartu48.5248.6792.7493forward
CNT30484609Arabidopsis thalianaChara braunii17.3244.7881.82176forward
CNT3058324Arabidopsis thalianaAmborella trichopoda50.6974.6487.96515forward
CNT30147990Arabidopsis thalianaBrachypodium distachyon48.5232.5692.29493forward
CNT30117690Arabidopsis thalianaOryza nivara18.1157.3292.93184forward

Expression of CNT30378684

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MQSNSCRSRNNGTGNNIVSVKKRSRNRFTNTINIYWRSSNECDNKNRSCGQ*

>peptide 2 (31 aa)
MIPLFPCLPATLSPTFISRFCEIYTRIISGL*

Sequence

>CNT30378684
CGCCCCTACGCTACTATCTATTCTTTTTTGTATTGTCTAAAAAAAAAAAAAAATACAAATTTCAATAAAAAATAAAAAAAGGTAGCAAATTCCACCTTAT
TTTTTTTCTAATAAAAAATATATAGTAATTTTTTATTATTTATTATTATTATTTATTATTAATATAATAAATAAAGTAAAATATGATACTCTATAAAAAT
TTGCTCATTTTTATAGAAAAAAACGAGTAATATAAGCCCTCTTTCTTATTTAAAGAAGGCTTATATTGCTCGTTTTTTACTAAACTAGATCTAGACTAAC
ACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAG
CAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG
ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATA
ATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTG
CGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTC
GCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATAATCAGGGACTCCCAAGCGCACAAATTCTCTAAGCATATCCTGTCT
AGGCAAAATTTTTGAAATGATACCTTTATTTCCATGTCTTCCAGCTACTTTATCACCTACTTTTATTTCACGTTTCTGTGAAATATATACACGAATTATT
TCTGGGTTATAACTTG