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Detailed information on CNT30378683


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EW68|PSBA_NYMAL, E-value = 8e-111

BLAST vs NONCODE:
NONATHT001119, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196112Arabidopsis thalianaPisum sativum52.0590.2893.3418forward
CNT30391503Arabidopsis thalianaTriticum turgidum43.8470.492.05352forward
CNT30145403Arabidopsis thalianaMedicago truncatula31.6394.4294.88254forward
CNT30605440Arabidopsis thalianaGossypium raimondii41.5981.6693.11334forward
CNT30363645Arabidopsis thalianaSorghum bicolor8.5922.489.8669reverse complement
CNT30102095Arabidopsis thalianaOryza rufipogon17.0658.5591.24137forward
CNT3049694Arabidopsis thalianaCucumis sativus14.3238.7295.65115forward

Expression of CNT30378683

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVKSLVYLIIRDSQAHKFSKARAAAAGFEKGIDRDFEPVLSMTPLN*

Sequence

>CNT30378683
AAGGCTTATATTGCTCGTTTTTTACTAAACTAGATCTAGACTAACACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGCTAGGTCTAGAGGG
AAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTA
CTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAA
ATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGCCCG
AATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGA
ATACACCAGCTACACCTAACATGTGAAATGGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAG
TTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATAATCAGGGACTC
CCAAGCGCACAAATTCTCTAAGGCTCGGGCAGCGGCAGCGGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAAC
TAA