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Detailed information on CNT30378682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST005600, E-value = 1e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225628Arabidopsis thalianaHordeum vulgare4.3735.3298.5971forward
CNT30604314Arabidopsis thalianaOryza punctata4.6828.1598.6876forward

Expression of CNT30378682

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MINRRRLKPLAFQANDAGSIPATRSKFTIALFFY*

>peptide 2 (51 aa)
MQSNSCRSRNNGTGNNIVSVKKRSRNRFTNTINIYWRSSNECDNKNRSCGQ*

Sequence

>CNT30378682
AAGGCTTATATTGCTCGTTTTTTACTAAACTAGATCTAGACTAACACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGCTAGGTCTAGAGGG
AAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTA
CTGATTGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTT
GAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCA
GATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACACCAGCTACACCTAACA
TGTGAAATGGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGG
CACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA
AACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAGCGACCC
CATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATAATCAGGGACTCCCAAGCGCACAAATTCTCTAAGT
AGATAATTGAGAGCTTATGTTATGGGTCGAATTTTTATTTCGTTCCCGTCTTTTTTTATTTGGGAATTTCTCCATCCATCATAAAGGAGCCGAATGAAAC
CAAAGTTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAATATAAAAATGATCAATCGACGTCGACTAAAACCCTTAGCCTTCCAAGCTAACGATGCGGG
TTCGATTCCCGCTACCCGCTCTAAATTCACAATTGCCCTTTTTTTTTATTAGAGAAAATTTGTTATATTAGAATTGTCTAATAGCAATTGTGTATTGAAT
TCACTTCAATACACAATTGCTAAAAAGATTTTGCACATTCTTTTTTTTTAACAATAGGAAAGTAAAAAAAAGCGAAAAGCGTCCATTGTCTAATGGATAG
GACATAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATAAATATATCTATATTGATATTTATCTATTATTTCCATTTCTATATA
TTATATATAATATCTATTTCGAAAAAAGATAAGAAATAAATAGAATAAGAAAGAAATTCTGAATGCTTTAAGATTTAATATTAAACAGATATTAGTTAGA
TACTTCTTTCTATTATATATACTTGACTTATAGACTTCTATTTCTAGAATTTCTTAAAAAATTAATTAAAATTAAAGAGTAAAATTGACTAAAGAATCAA
AAATTAAGAATAATCCGTTTCGTT