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Detailed information on CNT30378673


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Arabidopsis thalianaOryza sativa23.6661.3396.27295reverse complement
CNT30672164Arabidopsis thalianaSetaria viridis48.0472.0896.16599reverse complement
CNT30524649Arabidopsis thalianaSetaria italica41.7815.8197.7521reverse complement
CNT30641383Arabidopsis thalianaNymphaea colorata57.2622.8692.86714reverse complement
CNT30550219Arabidopsis thalianaIpomoea triloba57.2616.4498.32714reverse complement
CNT30702366Arabidopsis thalianaQuercus lobata24.2230.3298.01302forward
CNT30619000Arabidopsis thalianaSesamum indicum46.7519.0896.57583reverse complement
CNT30283003Arabidopsis thalianaChenopodium quinoa52.1368.0696.92650forward
CNT3020470Arabidopsis thalianaCitrullus lanatus24.2256.0397.68302forward
CNT30730480Arabidopsis thalianaCorchorus capsularis30.7930.6794.27384forward
CNT30632346Arabidopsis thalianaVigna unguiculata55.0924.5698.25687reverse complement
CNT30490123Arabidopsis thalianaOlea europaea23.3416.7195.88291reverse complement
CNT30506406Arabidopsis thalianaNicotiana attenuata57.2627.998.32714forward
CNT30156864Arabidopsis thalianaPistacia vera20.6917.5495.74258forward
CNT3089926Arabidopsis thalianaSolanum tuberosum28.0715.8297.43350forward
CNT30185187Arabidopsis thalianaSecale cereale57.7420.3696.39720reverse complement
CNT30299053Arabidopsis thalianaTriticum aestivum57.7420.0996.39720reverse complement
CNT30219690Arabidopsis thalianaHordeum vulgare51.894.3195.2646forward
CNT30396495Arabidopsis thalianaTriticum turgidum57.7444.6996.53720reverse complement
CNT30569655Arabidopsis thalianaActinidia chinensis57.0219.9797.33711reverse complement
CNT30543266Arabidopsis thalianaBrassica napus54.2924.9499.56677reverse complement
CNT30234026Arabidopsis thalianaBrassica oleracea23.573.896.25293forward
CNT30508923Arabidopsis thalianaSolanum lycopersicum12.5947.01100157reverse complement
CNT30554477Arabidopsis thalianaOryza glaberrima25.9844.8196.3324forward
CNT30147396Arabidopsis thalianaMedicago truncatula55.0923.0998.4687reverse complement
CNT30438197Arabidopsis thalianaAegilops tauschii26.731.8197.3333reverse complement
CNT30258698Arabidopsis thalianaAvena sativa19.5730.299.18244forward
CNT30670388Arabidopsis thalianaTriticum dicoccoides57.7425.6896.25720reverse complement
CNT30140161Arabidopsis thalianaLolium perenne57.7421.1596.67720reverse complement
CNT3017954Arabidopsis thalianaZea mays57.741996.25720reverse complement
CNT30605073Arabidopsis thalianaGossypium raimondii57.2646.9798.32714forward
CNT30216578Arabidopsis thalianaKalanchoe fedtschenkoi54.7720.597.8683reverse complement
CNT3067980Arabidopsis thalianaLeersia perrieri12.9153.4996.89161forward
CNT30655407Arabidopsis thalianaRosa chinensis56.721.1598.44707reverse complement
CNT30207637Arabidopsis thalianaHelianthus annuus30.4719.4396.05380reverse complement
CNT30715685Arabidopsis thalianaMalus domestica golden35.9336.8186.38448forward
CNT30628241Arabidopsis thalianaDaucus carota49.2422.7498.53614forward
CNT30688989Arabidopsis thalianaTriticum urartu57.7436.696.53720reverse complement
CNT30721631Arabidopsis thalianaTriticum spelta57.7420.7396.11720reverse complement
CNT30346087Arabidopsis thalianaEragrostis tef57.7469.6396.67720reverse complement
CNT30595568Arabidopsis thalianaOryza meridionalis20.6966.4993.41258forward
CNT30359771Arabidopsis thalianaLactuca sativa57.2668.3398.6714reverse complement
CNT30484250Arabidopsis thalianaChara braunii14.9225.6294.62186forward
CNT30429739Arabidopsis thalianaPapaver somniferum46.431895.51579reverse complement
CNT30571858Arabidopsis thalianaVitis vinifera57.2620.698.6714forward
CNT3056076Arabidopsis thalianaAmborella trichopoda47.4725.7293.58592reverse complement
CNT30106724Arabidopsis thalianaOryza longistaminata29.3541.1794.54366reverse complement
CNT3038324Arabidopsis thalianaCucumis melo51.9634.3697.38648forward
CNT30331625Arabidopsis thalianaDioscorea rotundata18.7773.5895.73234reverse complement
CNT3099709Arabidopsis thalianaOryza rufipogon29.7517.0498.92371reverse complement
CNT30499372Arabidopsis thalianaDigitaria exilis57.7421.1896.67720reverse complement
CNT30603680Arabidopsis thalianaOryza punctata57.7418.2496.53720reverse complement
CNT30557400Arabidopsis thalianaPanicum hallii49.3244.8396.42615reverse complement
CNT3039925Arabidopsis thalianaMarchantia polymorpha26.2265.9396.02327reverse complement

Expression of CNT30378673

Peptides detected in this lncRNA

>peptide 1 (88 aa)
VDIEVPNDSVDKSSWESSACYPRRTFDPLSESPSTRDSRITMADFRLCSTSRGLSGLVLLCHDLPPILHIRSRLSLRSYSEGARGLTV*

>peptide 2 (68 aa)
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPS*

>peptide 3 (29 aa)
ESTSRCQTTPSIRALGSHQPVIPGVPLIR*

>peptide 4 (34 aa)
MTRVATINRLATMAGRYALLSRDPYSNQKTKGPY*

Sequence

>CNT30378673
GAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCC
TTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGTGGTCTTTCAGGATTGGTCCTTCTATGTCACGACCTCCCACCT
ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATT
CAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGT
TAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCG
TGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCC
GAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAG
TTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTCTTGACTATGACAAGAGTCGCGACTATAAACAGACTCGCGACTA
TGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGGCCGAGTCAGAAAGGCTTTGATGACTCAAG
GTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGCTACGCTGCCCTCGGCCCGATCATCCAATTCGCTCCAAGAGAGAGGCATGGTTTTGTAGTCAAA
GCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAGCCT
TCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTATCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGCAGCTTTCAA