« Back to Arabidopsis thaliana search


Detailed information on CNT30378612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Arabidopsis thalianaEucalyptus grandis24.8414.5884.4277forward
CNT3021436Arabidopsis thalianaCitrullus lanatus39.0337.5885.12121forward
CNT30157163Arabidopsis thalianaPistacia vera43.2330.5282.84134forward
CNT30238282Arabidopsis thalianaBrassica oleracea48.3927.9389.33150forward
CNT30146603Arabidopsis thalianaMedicago truncatula41.6134.0485.27129forward
CNT30265141Arabidopsis thalianaBrassica rapa46.7734.9488.28145forward
CNT30362074Arabidopsis thalianaSorghum bicolor39.3521.6781.97122forward
CNT30355760Arabidopsis thalianaLactuca sativa32.5815.1283.17101forward
CNT30154533Arabidopsis thalianaPrunus persica41.2929.1685.16128forward
CNT30706321Arabidopsis thalianaPrunus avium41.2923.1985.16128forward
CNT3026328Arabidopsis thalianaPopulus trichocarpa40.3223.6786.4125forward
CNT30113754Arabidopsis thalianaFicus carica33.5525.4386.54104forward

Expression of CNT30378612

Peptides detected in this lncRNA

>peptide 1 (62 aa)
VTDSNPIRLNDDCLLLLEKQRIPNRTVIVENRTCKQISIRRFNDFSTKSCTCPLAEGITARP*

Sequence

>CNT30378612
CGTTACCGATAGTAACCCGATCAGGCTGAACGATGATTGCCTTCTCCTTCTTGAGAAGCAGAGAATACCCAACAGAACTGTAATCGTTGAAAATCGGACC
TGCAAACAGATAAGCATCCGCAGATTCAACGATTTCAGCACAAAAAGCTGTACTTGTCCTTTAGCAGAAGGCATCACAGCAAGACCATAGCCAGAAGCAT
CAGCAAGCTCAACAAAAGCATCCGCGGCTTTCGCAACCCGCATTTTCGGCCCACCAACAAGAACTGGCTTCACAGCTTTGTTCAAGAACTCAGCAGCTGC
CTCCACCGCC