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Detailed information on CNT30378481


BLAST search results

BLAST vs Swiss-Prot:
sp|P10797|RBS2B_ARATH, E-value = 4e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30355778Arabidopsis thalianaLactuca sativa20.7122.1485.06174forward

Expression of CNT30378481

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MLRDKGKVQCILPPTRIQHKESTCCGEVMSLLALRLTLPPLLVMEVMSLLALRVTGKEADDFKPVNGATMVA*

>peptide 2 (88 aa)
MEASTLSSIVHHSIRECFRAHGTQIRAIYKENHSIQLIYILVIVYFGYPLKFLAMKKKNKGCLETKEKFSVYYLQLEFNTRNPLVAEK*

>peptide 3 (65 aa)
MILMKAPGVLLLAFFNFLQHLSGVGASEQWKLPHCPVSSIIVSGSVSVLTVHKSVLYIKKTIQYN*

Sequence

>CNT30378481
CGCACGGATATATAAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAATTGTCTCATAAAGAGAAAAAGAACACAGACAATAGGAAATGAA
ATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACG
GGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGGTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAA
CAATGGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGCTATATATAAAGAAAACCA
TTCAATACAATTGATATATATATTGGTGATAGTCTATTTCGGTTATCCACTTAAGTTTCTAGCAATGAAGAAGAAGAATAAAGGATGCTTAGAGACAAAG
GAAAAGTTCAGTGTATATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGTAATGTCGTTGTTGGCCTTGCGGCTAACTCTTCC
CCCATTGCTTGTGATGGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAAGAAGCGGATGACTTCAAACCAGTGAATGGAGCGACCATGGTGGCT
TGAGCCGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATTACTTCTTCTTCTTCTTCTTTTGCTTAATTGTTTTTCTATTGGTTTTGTC
ATCTTTATATAGTGAGAACCGTAAGAGGCAAAAAGCCCTA