Detailed information on CNT30378432


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 3e-128

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Arabidopsis thalianaCorylus avellana72.0472.9883.9559forward
CNT30538027Arabidopsis thalianaBrassica napus67.1427.4888.87521forward
CNT3061706Arabidopsis thalianaArabidopsis lyrata100.1384.8389.19777forward
CNT3079055Arabidopsis thalianaBrassica juncea71.3951.1587.18554forward
CNT30330477Arabidopsis thalianaDioscorea rotundata71.3977.3783.03554forward

Expression of CNT30378432

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRLEQPLLITSQKLRSFHHEDEEPSEESTPSGCCNLQESDHPQAASQRR*

>peptide 2 (54 aa)
MKLQNIDKDKFFPQTEAETKPGEDLTSQVHETRTTTFDHITKAQKLPPRRRRTK*

>peptide 3 (30 aa)
MVFPVRVFTNICIPPRRRSTRWRVDSFWML*

>peptide 4 (48 aa)
MEGRLLLDVVISECASIFKLFSSKYESLLIWWNPFLVLNLCLDIIDCV*

Sequence

>CNT30378432
GTTTTAACATGCACTTGGATTATTATTAAAAGTTGAAACAGCAACCAAAGGTTCATAAGAAAATAAAAGAAAACAGAAAATGAAACTTCAGAACATCGAT
AAGGATAAGTTTTTCCCGCAGACCGAAGCAGAAACCAAACCAGGTGAAGATCTCACCTCCCAAGTGCATGAGACTCGAACAACCACTTTTGATCACATCA
CAAAAGCTCAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTG
CTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCA
AGAGTAATGGTTTTTCCGGTAAGGGTCTTCACAAATATCTGCATACCACCACGGAGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAAT
CAGCGAGTGTGCGTCCATCTTCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGAATCTTTGCCTTGACATT
ATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCAGTTAAGGTCTTCACAAAAATCTGCATACCACCTCTCAGACGAAGCACCAAATGA
AGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATC