Detailed information on CNT3037832


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 2e-86

BLAST vs NONCODE:
NONMTRT001761, E-value = 6e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533956Cucumis meloEucalyptus grandis50.9561.4677.86429forward
CNT30516757Cucumis meloJuglans regia19.4833.1381.71164forward
CNT30698134Cucumis meloQuercus lobata34.3215.578.89289forward
CNT3021623Cucumis meloCitrullus lanatus49.4130.6394.47416forward
CNT30730016Cucumis meloCorchorus capsularis38.7249.2480.06326forward
CNT30629841Cucumis meloVigna unguiculata20.3129.2381.87171forward
CNT30507460Cucumis meloNicotiana attenuata11.5232.0185.5797forward
CNT30710011Cucumis meloGlycine max25.7750.2380.65217forward
CNT3042792Cucumis meloPrunus dulcis13.330.3585.71112forward
CNT30635301Cucumis meloCapsicum annuum14.8531.4984125forward
CNT3094368Cucumis meloSolanum tuberosum26.3785.7180.63222forward
CNT30292923Cucumis meloTriticum aestivum13.951.3281.2117forward
CNT3084712Cucumis meloVigna radiata17.5852.379.73148forward
CNT30249136Cucumis meloAvena sativa14.1324.0481.51119forward
CNT30610860Cucumis meloGossypium raimondii9.527.1288.7580forward
CNT30129085Cucumis meloCorymbia citriodora40.3832.2978.82340forward
CNT30154501Cucumis meloPrunus persica18.8850.9683.65159forward
CNT30644515Cucumis meloCannabis sativa26.638.7580.36224forward
CNT3031830Cucumis meloTheobroma cacao42.0496.9978.81354forward
CNT30112090Cucumis meloFicus carica20.078.2683.43169forward
CNT30726871Cucumis meloLupinus angustifolius28.0313.1580.93236forward
CNT3049017Cucumis meloCucumis sativus54.5146.7996.73459forward

Expression of CNT3037832

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RRRRTRLRILPTHRLFAEDQGSSSCQSKSMMVR*

>peptide 2 (63 aa)
MEGMRRRGEADRPLGEIKALVLDEAKLELSWLAMGEVAVAMAAAFASAAFGLWKDQWQRRRMR*

>peptide 3 (67 aa)
PKKNPPENFAHPSAVCRGSGVFFLPVKVNDGAVDGSPSLNDATPYIVKQMLKMTMRPPAASEPAPPA*

Sequence

>CNT3037832
CGCCGAAGAAGAACCCGCCTGAGAATTTTGCCCACCCATCGGCTGTTTGCAGAGGATCAGGGGTCTTCTTCCTGCCAGTCAAAGTCAATGATGGTGCGGT
AGATGGCTCTCCTTCATTGAATGATGCAACACCATACATTGTCAAGCAGATGCTCAAAATGACAATGAGACCACCGGCAGCCAGTGAGCCTGCTCCTCCG
GCGTAGGCTGTGTTCCTTAGAGGGCCAGCTTTGACAAATGGACCAACCAGAAAGAAACCGTGAGCCAGGCCCACTTCAATTCCCCTCAGCAATGGACTGA
CTGCTGTTCTGTAGGCTGGGAGGTTTGAAAGGTACCATGCTATCAGTGGGCTTGAGGTTACTGGAGTCTCAAGGCTTCCAATGAATGGGTCTCCATTGAT
TGGCTGGATCACTTGGTAAGTTGGCTGCAACAGTTTCAATACCCCATTAACATCTTTGCATTGCATGTTTTTTTTTTATCCACTTTGAATACCTTTTTCT
TTTTCTAAGTACTATCTTCACATGCATTTTCTGCATTAATTTTTCTTTCACTAACGGATCTTTTCTCTACCTAACCGTTACCGGCTTCTTCTCATTTGTG
ATCCTCCAAGATGGAAGGGATGCGTCGGAGGGGCGAAGCGGATAGGCCTTTAGGAGAGATCAAAGCTCTGGTGTTAGATGAAGCGAAGCTGGAACTGAGC
TGGCTGGCAATGGGAGAGGTTGCAGTGGCCATGGCTGCTGCTTTTGCTTCTGCTGCCTTTGGCTTGTGGAAGGATCAGTGGCAGAGAAGAAGAATGAGGT
GAGATTTTTAGATTTGGTTTTGGAGGTTAGTTTAAGTTCTTG