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Detailed information on CNT30378283


BLAST search results

BLAST vs Swiss-Prot:
sp|P10795|RBS1A_ARATH, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30312471Arabidopsis thalianaCamelina sativa39.5359.0190.27442forward

Expression of CNT30378283

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLAMEVMSLLVLRVTGNAADDFKPVNGATMVA*

>peptide 2 (30 aa)
MEASTLSSTVHRSIRECFRAHGTQIRAINT*

Sequence

>CNT30378283
CTCATCGGAAATTTTCAAACTAGTTAACCATCGGAAAAAATCAAGACGCACGGATATATAAATTACATATTCATAAATCAGACATTTGACAATCCGATAG
AAATTGTCTCATAAAGAGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGA
AGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCA
TTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTT
CCGTGCTCACGGTACACAAATCCGTGCTATAAACACATAAGAAAACCATTCAATACAATTGATATTGGAGGATATGCACAAGGTGATATAGTCTATTTCG
GTTCTACAAAATCCGGTTATAGGCTAATATTTCTAGCAATGAAAACGAATAAATAATAATGATTAGTAGACAAAAGAAAACTTTTGTGTTTATTACCTCT
AACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCT
CAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAAATTAATATATCCTATGTTTTGTTTTATTGCACATGACAAAAGAC
AGTTTTTATTGATGATATTACCTTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAATGCA
GCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATTACTTCTT
CTTCTTCTTCTTTTGCTTAATTGTTTTTCTATTGGTTTTGTCATCTTTATATAGTGAGAACCGTAAGAGGCAAAAAGCCCTAATGATCAAAGGGTCCGGG
ATTCATGATAACTCGTTC