Detailed information on CNT30378220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT003909, E-value = 5e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526567Arabidopsis thalianaPhaseolus vulgaris28.2125.1485.5690reverse complement
CNT30477981Arabidopsis thalianaArabidopsis halleri32.9210.9686.67105forward
CNT30369442Arabidopsis thalianaOryza glumipatula21.326.4885.2968forward
CNT30704144Arabidopsis thalianaPrunus avium28.539.5783.5291forward
CNT30106351Arabidopsis thalianaOryza longistaminata21.3216.5585.2968forward
CNT30174426Arabidopsis thalianaVigna angularis28.216.8584.4490forward

Expression of CNT30378220

Peptides detected in this lncRNA

>peptide 1 (71 aa)
KLLSGLGLTTKTEILWGCFFVIIGSVSFFGFVIAVVSSNDRHYCFLIPLTLPVIMVAVYFHWLSMKLFKHA*

>peptide 2 (39 aa)
EALVWTGFNNEDRDLVGMFLRDHWFCFLLRIRHCSRVVE*

Sequence

>CNT30378220
TGAAGCTCTTGTCTGGACTGGGTTTAACAACGAAGACAGAGATCTTGTGGGGATGTTTCTTCGTGATCATTGGTTCTGTTTCCTTCTTCGGATTCGTCAT
TGCAGTCGTGTCGTCGAATGATAGGCACTATTGCTTCTTGATTCCATTGACTCTACCAGTTATAATGGTTGCTGTCTACTTTCATTGGCTTAGCATGAAG
CTCTTCAAGCATGCTTGATATATCCATCGATCACCATTTTAAGGATCTATTCATGTAGAAGCTGAGCTGAAGCAAGAAGAGCAAATAAAGACCTGATAAG
ATGACAAAGATTGACAAGA