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Detailed information on CNT30378198


BLAST search results

BLAST vs Swiss-Prot:
sp|P10795|RBS1A_ARATH, E-value = 8e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543822Arabidopsis thalianaBrassica napus33.0388.2889.06256forward
CNT30235546Arabidopsis thalianaBrassica oleracea33.4231.289.96259forward
CNT3075084Arabidopsis thalianaBrassica juncea35.6131.891.67276forward

Expression of CNT30378198

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEASTLSSTVHRSIRECFRAHGTQIRAINT*

>peptide 2 (29 aa)
MEVMSLLALRVTGKEADDFKPVNGATMVA*

Sequence

>CNT30378198
ATTGTCTCATAAAGAGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAG
CTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATT
CTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCC
GTGCTCACGGTACACAAATCCGTGCTATAAACACATAAGAAAACCATTCAATACAATTGATATTGGAGGATATGCACAAGGTGATATAGTCTATTTCGGT
TCTACAAAATCCGGTTATAGGCTAATATTTCTAGCAATGAAAACGAATAAATAATAATGATTAGTAGACAAAAGAAAACTTTTGTGTTTATTACCTCTAA
CTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGCTAACTCTTCCTCCGT
TGCTTGTGATGGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAAGAAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGC
CGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATTACTTCTTCTTCTTCTTCTTTTGCTTAATT