Detailed information on CNT3037808


BLAST search results

BLAST vs Swiss-Prot:
sp|P12360|CB11_SOLLC, E-value = 4e-67

BLAST vs NONCODE:
NONMTRT001455, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525458Cucumis meloPhaseolus vulgaris3112.4684.96226forward
CNT30629575Cucumis meloVigna unguiculata17.1530.4985.6125forward
CNT30708472Cucumis meloGlycine max17.9730.6182.44131forward
CNT30567058Cucumis meloActinidia chinensis16.7433.8982.79122forward
CNT30588696Cucumis meloMusa acuminata15.0940.8985.45110forward
CNT30236705Cucumis meloBrassica oleracea21.2632.9183.23155forward
CNT30609040Cucumis meloGossypium raimondii26.241.5283.25191forward
CNT30360105Cucumis meloLactuca sativa33.8828.0780.57247forward
CNT3034379Cucumis meloTheobroma cacao29.4927.5681.4215forward

Expression of CNT3037808

Peptides detected in this lncRNA

>peptide 1 (73 aa)
GQIVAASEVSGEARLSSKREAYFRLCSPILLEEGQKDLLSSLMGQKHLQGTSSSQGLSPCCAGALQKQWQGTQ*

>peptide 2 (42 aa)
MLRWCSTKAMARNSMTKMVGKVPHGTGCPKYVAWPPGTAAHS*

>peptide 3 (53 aa)
MENREDALTATPEMGTAAANLDLEEERTEGKAVVAMPQLIKVLEAIEEKERRD*

Sequence

>CNT3037808
GGTCAAATTGTGGCGGCGTCTGAAGTCTCCGGTGAGGCTCGGTTGAGTTCGAAGAGAGAGGCTTACTTCAGACTGTGTTCTCCGATCCTTTTGGAAGAAG
GTCAAAAGGATCTTTTGAGTAGCCTAATGGGTCAAAAGCACCTCCAGGGTACTTCTTCTTCTCAGGGTCTTTCTCCATGCTGCGCTGGTGCTCTACAAAA
GCAATGGCAAGGAACTCAATGACCAAAATGGTGGGCAAAGTTCCCCATGGAACTGGTTGTCCCAAGTATGTAGCTTGGCCTCCTGGAACTGCTGCCCATT
CTTGAGCTTTCACCCAGTTGCCCAATCCCAAAGCCTCAGGTACCAAAATCCCTGGCTAAAAAACAAAAGGAACAGCATTGGAAAATGAAATAGGAAAAGC
CCCCATCAATCTCAGAATCAAGCAACTGAATTTGGTAAGCTTACAACAGCAAGCATGGCCCATCTGCAGTGAATTAGCTCAGACTCCTTGAATCTCTCGA
GGTAGGGGGGACGGGGCTGGCCAGGCATCCACTCAGAGGACATGGAAAATCGGGAAGATGCATTGACAGCGACACCGGAAATGGGGACAGCGGCTGCGAA
TTTAGACTTAGAAGAAGAAAGGACTGAAGGGAAAGCGGTGGTGGCAATGCCACAGCTCATCAAGGTGTTGGAAGCCATTGAAGAAAAAGAGAGAAGAGAT
TGAGAGAGAGAGTGAGAGAGTGTGAGAAT