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Detailed information on CNT30377828


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224666Arabidopsis thalianaHordeum vulgare17.126.5888.1459forward
CNT30555741Arabidopsis thalianaOryza glaberrima13.6221.2791.4947forward
CNT30312764Arabidopsis thalianaCamelina sativa64.6459.1593.72223forward
CNT30264951Arabidopsis thalianaBrassica rapa4041.0794.2138forward
CNT30129110Arabidopsis thalianaCorymbia citriodora21.4519.0785.1474forward
CNT30478263Arabidopsis thalianaArabidopsis halleri100.2910095.95346forward
CNT30597221Arabidopsis thalianaOryza meridionalis13.6221.9689.3647forward
CNT3027096Arabidopsis thalianaPopulus trichocarpa28.4128.1687.7698forward
CNT30104583Arabidopsis thalianaOryza rufipogon13.6222.1793.6247forward
CNT30578474Arabidopsis thalianaOryza barthii13.6223.591.4947forward
CNT30118059Arabidopsis thalianaOryza nivara18.2621.585.7163forward
CNT3049510Arabidopsis thalianaCucumis sativus37.9732.4386.26131forward

Expression of CNT30377828

Peptides detected in this lncRNA

>peptide 1 (61 aa)
PSSACKVLRDAAKSLAQMFLPSTTPAKRYFPSGKPALTKSRAVTPFNEVRVLYASAGISAK*

>peptide 2 (36 aa)
LQVPARCLGTQQSRWPRCSFHQQHQQRGTFPQGNLP*

>peptide 3 (35 aa)
MRLGSCMPQQGYQRSRSRQEHSNQKELIQVQHRHQ*

Sequence

>CNT30377828
CCTTCAAGTGCCTGCAAGGTGCTTAGGGACGCAGCAAAGTCGTTGGCCCAGATGTTCCTTCCATCAACAACACCAGCAAAGAGGTACTTTCCCTCAGGGA
AACCTGCCTTGACCAAATCAAGGGCAGTCACACCCTTCAATGAGGTTAGGGTCTTGTATGCCTCAGCAGGGATATCAGCGAAGTAGGTCTCGACAAGAAC
ATTCAAACCAGAAAGAGTTGATTCAAGTTCAGCATAGGCACCAGTAAAGGCCTGGAGTTTCTGACCCTCAAGATCCATAACAAGGACAGGCTCGTCAAGC
TGAATCCAGGTGGCACCAGCAGCCTTAAGCTCGGTAATCACTTCC