Detailed information on CNT30377811


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39172|AER_ARATH, E-value = 7e-83

BLAST vs NONCODE:
NONATHT003332, E-value = 3e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530009Arabidopsis thalianaEucalyptus grandis30.9632.981.75126forward
CNT3098701Arabidopsis thalianaSolanum tuberosum30.7122.685.6125forward
CNT30312622Arabidopsis thalianaCamelina sativa93.3753.993.95380forward
CNT30128700Arabidopsis thalianaCorymbia citriodora25.0625.8282.35102forward
CNT3026596Arabidopsis thalianaPopulus trichocarpa30.2229.5782.93123forward
CNT30594208Arabidopsis thalianaEragrostis curvula27.0339.1581.82110forward

Expression of CNT30377811

Peptides detected in this lncRNA

>peptide 1 (61 aa)
DKVQVSNIVSLTSNNNNLFPNILTMEESHKSFGSFLKPISYIFHVRYLPFSNVGKHKLQEL*

>peptide 2 (52 aa)
MLDRLCTPSWFSRLYCEIIPQTAIRPCMFMFISTASSILPPTFSKYMSMPLGK

Sequence

>CNT30377811
TGGATAAAGTACAAGTATCAAACATAGTTTCACTCACGAGCAACAACAACAACTTGTTTCCCAACATTCTTACCATGGAAGAGTCCCACAAGAGCTTCGG
GAGCTTTCTCAAGCCCATCAGCTACATCTTCCACGTACGTTATCTTCCCTTCTCTAATGTGGGGAAGCACAAACTCCAAGAACTTTGAGTATTTGTCGTA
GAAATCAGACACTACAAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCTTGGTTCTCAAGATTGTACTGTGAGATC
ATTCCACAGACAGCGATACGCCCGTGCATGTTCATGTTCATAAGCACTGCATCTAGCATTTTGCCTCCTACATTCTCAAAGTATATGTCAATGCCATTAG
GGAAACA