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Detailed information on CNT30377715


BLAST search results

BLAST vs Swiss-Prot:
sp|P10795|RBS1A_ARATH, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3074958Arabidopsis thalianaBrassica juncea36.3144.3785.49386forward
CNT30261239Arabidopsis thalianaBrassica rapa3547.0986.02372forward
CNT30613234Arabidopsis thalianaArabis alpina35.1865.6188.5374forward

Expression of CNT30377715

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEASTLSSTVHRSIRECFRAHGTQIRAINT*

>peptide 2 (39 aa)
MQLTLPPLLVMEVMSLLALRVTGKEADDFKPVNGATMVA*

Sequence

>CNT30377715
AGACGCACGGATATATAAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAATTGTCTCATAAAGAGAAAAAGAACACAGACAATAGGAAAT
GAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTG
ACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCG
AACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGCTATAAACACATAAGAA
AACCATTCAATACAATTGATATTGGAGGATATGCACAAGGTGATATAGTCTATTTCGGTTCTACAAAATCCGGTTATAGGCTAATATTTCTAGCAATGAA
AACGAATAAATAATAATGATTAGTAGACAAAAGAAAACTTTTGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGT
AGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCGATTGGTGGCCACACCTATAATTCCCA
ATTCCCAATTATTCTTAAGTATTGTTCAGTTGCACTAATTGCACATGACAAAAGACAGTTTTCATTAATGACATTACCTTCATGCAGCTAACTCTTCCCC
CATTGCTTGTGATGGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAAGAAGCGGATGACTTCAAACCAGTGAATGGAGCGACCATGGTGGCTTG
AGCCGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATTACTTCTTCTTCTTCTTCTTTTGCTTAATTGTTTTTCTATTGGTTTTGTCAT
CTTTATATAGTGAGAACCGTAAGAGGCAAAAAGCCCTAATGATCAAAGGGTCCGGGATTCATG