Detailed information on CNT30377699


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-159

BLAST vs NONCODE:
NONTPRT002153, E-value = 1e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406246Arabidopsis thalianaBeta vulgaris74.5694.7883.02636forward
CNT30156148Arabidopsis thalianaPistacia vera76.3270.9983.87651forward
CNT30238974Arabidopsis thalianaBrassica oleracea81.9561.8685.98699forward
CNT30510145Arabidopsis thalianaSolanum lycopersicum76.4445.7984.51652forward
CNT30425514Arabidopsis thalianaPapaver somniferum80.0749.2483.89683forward
CNT3026451Arabidopsis thalianaPopulus trichocarpa80.374.4683.94685forward
CNT30726539Arabidopsis thalianaLupinus angustifolius80.4272.1383.53686forward

Expression of CNT30377699

Peptides detected in this lncRNA

>peptide 1 (39 aa)
QTKVHKRKAENENEIDRDKFFQLTETQTTPGEIDHLPSA*

>peptide 2 (31 aa)
MVSELSTSRVIVLPVRVLTKICIPPLRRSTK*

>peptide 3 (48 aa)
MKCRLLLDVVICKGASIFELLTGKDKPLLIRRNSLFILDLSFDIVNGV*

>peptide 4 (31 aa)
MVSELSTSRVMVFPVRVFTKICIPPRRRSTR*

>peptide 5 (73 aa)
MRHEPTTYHQITKSLEASTTKTKNQVKSRLLLDVVICKCATILKLFSSEDESLLVWWDPFLVLNLSLDIIDGV*

Sequence

>CNT30377699
CAAACGAAGGTACATAAAAGAAAAGCAGAAAATGAAAACGAAATCGATAGGGATAAGTTTTTCCAACTGACGGAAACACAAACTACACCAGGTGAAATAG
ATCACCTCCCAAGTGCATGAGACACGAACCAACCACTTATCATCAGATCACAAAAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGT
CGACTCCTTCTGGATGTTGTAATCTGCAAGTGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTG
TCCTGAATCTTAGCCTTGACATTATCGATGGTGTCTGAGCTTTCAACCTCCAGAGTAATGGTCTTTCCGGTAAGGGTCTTCACAAAGATCTGCATACCAC
CACGGAGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGTCCATCTTCGAGCTGCTTACCGGCAAAGATAAGCCT
CTGCTGATCCGGAGGAATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCAAGGGTGATTGTTTTACCAGTG
AGGGTCTTGACAAAGATTTGCATACCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTACGGCCATCTT
CTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTC
AACCTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCATCT