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Detailed information on CNT30377354


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517641Arabidopsis thalianaJuglans regia49.461.3481.21330forward
CNT30605054Arabidopsis thalianaGossypium raimondii58.3868.7880.51390forward
CNT30686114Arabidopsis thalianaTriticum urartu24.727.5983.64165forward

Expression of CNT30377354

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LPSGLSVSLSDLLVFRYQDVVKQDTILHCPDLNTDGCNGFVIGSV*

>peptide 2 (60 aa)
MGKLVIRNRGRELQMVFNVLATLGILVLQDEMHFVRTSTLVRPKHDRVRGFTIESLRCPSS

>peptide 3 (52 aa)
ASKWSVCKSQRPSRLSLSRCCQTRYHLALSRSQYRWLQWVRNRVCLAQSSQG*

Sequence

>CNT30377354
GGCTTCCAAGTGGTCTGTCTGTAAGTCTCAGCGACCTTCTCGTCTTTCGCTATCAAGATGTTGTCAAACAAGATACCATCTTGCATTGTCCAGATCTCAA
TACCGATGGCTGCAATGGGTTCGTAATCGGGTCTGTCTAGCTCAAAGTAGTCAGGGTTAGGGATATCTCTGGGTTTCCAGATTCCCTTGTAAGCCGGGTT
ATCAATAAGAGGTGAGCTCCATTTGCCCTTGTAAGCAGGATTCCTCTTCATTGGTCTCTTCCATTCACCACAACCAGGTGCTGCTTCACACTTGGGGTTG
TCAATTTTAGGAGCCTCCCACATACCATCTTCCTCATCATCCCAATCTTCAGGCTTGGTCGCTTCGGGGTCGTCGACCTCCTCAGGCTCAAAGTCTTCAC
CAGAGAGTAAATTGGCCTTTTTCTTCTCCTCTCCATCAACCAAAATTCTAACCTCGTTGTCGGGTTTCAAGATGGCGGTGTAGACATGGGAAAGCTTGTC
ATAAGGAACAGAGGGAGGGAACTTCAGATGGTGTTCAACGTACTCGCCACTCTTGGGATTCTTGTGCTTCAAGATGAAATGCACTTTGTTCGTACCTCCA
CACTTGTCAGGCCCAAACATGATAGAGTAAGGGGATTCACTATCGAATCCCTGAGGTGTCCATCCAGC