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Detailed information on CNT30377308


BLAST search results

BLAST vs Swiss-Prot:
sp|P49040|SUS1_ARATH, E-value = 4e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500405Arabidopsis thalianaCoffea canephora33.0329.6480.95147forward
CNT3061548Arabidopsis thalianaArabidopsis lyrata55.7330.2897.58248forward
CNT30610552Arabidopsis thalianaGossypium raimondii34.1623.6885.53152forward
CNT30478109Arabidopsis thalianaArabidopsis halleri53.2695.1897.89237forward
CNT3023679Arabidopsis thalianaPopulus trichocarpa32.8125.9384.25146forward

Expression of CNT30377308

Peptides detected in this lncRNA

>peptide 1 (40 aa)
NILVKEPSHDEFIFFLTSPQSSEALLLRSHPSEMDPPYTW*

>peptide 2 (64 aa)
MWKPDLPCTMISAGPPLQVAKVGKPQVIASTTVNPKASYNADVPVQLTVPYPVHLRGDPPELTV*

Sequence

>CNT30377308
CTAATATACTAGTAAAAGAACCAAGCCATGATGAGTTTATTTTTTTTCTTACTTCTCCTCAATCCTCTGAAGCCCTCCTTTTGAGATCTCATCCCAGTGA
GATGGATCCTCCTTACACTTGGTGAAGAAATCAGCAAGAGTATCAGCAGCCTGATCACCATGGTAAGGGTCAATGTGGAAACCCGATTTACCGTGCACAA
TGATCTCAGCTGGACCACCTTTGCAAGTGGCGAAAGTCGGTAAACCACAAGTCATAGCCTCCACAACAGTTAACCCAAAGGCTTCATATAATGCAGATGT
ACCGGTACAGCTCACCGTTCCTTACCCGGTCCATCTGAGAGGAGATCCACCTGAACTGACCGTTTAGCTTGTATTCCTCAATGAGATCATACATTTTCTT
CATCTCTGCTTTCTCTTCATTGTCCTTTGACTCTTTCCTCCTGTC