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Detailed information on CNT30377290


BLAST search results

BLAST vs Swiss-Prot:
sp|P10798|RBS3B_ARATH, E-value = 4e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727206Arabidopsis thalianaCorchorus capsularis22.648.7285.57201forward
CNT30479769Arabidopsis thalianaArabidopsis halleri54.8463.9192.2487forward
CNT30573704Arabidopsis thalianaVitis vinifera20.6123.4380.87183forward
CNT3039544Arabidopsis thalianaMarchantia polymorpha11.4938.3586.27102forward

Expression of CNT30377290

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLRDKGKVQCILPPTRIQHKESTCCGEGSQLP*

>peptide 2 (51 aa)
MKKKNKGCLETKEKFSVYYLQLEFNTRNPLVAEKVVNFLSQFDVSKVREVR*

>peptide 3 (39 aa)
MQLTLPPLLVMEVMSLLALRVTGKEADDFKPVNGATMVA*

>peptide 4 (36 aa)
MEASTLSSTVHRSIRDVSVLTVHKSVLYIKKTIQYN*

Sequence

>CNT30377290
ATTGTCTCATAAAGAGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAG
CTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATT
CTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGATGTTTCCG
TGCTCACGGTACACAAATCCGTGCTATATATAAAGAAAACCATTCAATACAATTGATATATATATTGGTGATAGTCTATTTCGGTTATCCACTTAAGTTT
CTAGCAATGAAGAAGAAGAATAAAGGATGCTTAGAGACAAAGGAAAAGTTCAGTGTATATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTG
CGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCGATTGGTGGCCACACCT
ATAATTCCCAATTCCCAATTATTCTTAAGTATTGTTCAGTTGCACTAATTGCACATGACAAAAGACAGTTTTCATTAATGACATTACCTTCATGCAGCTA
ACTCTTCCCCCATTGCTTGTGATGGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAAGAAGCGGATGACTTCAAACCAGTGAATGGAGCGACCA
TGGTGGCTTGAGCCGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATTACTTCTTCTTCTTCTTCTTTTGCTTAATT