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Detailed information on CNT30377262


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR0|TBB3_ARATH, E-value = 5e-101

BLAST vs NONCODE:
NONBNAT005393, E-value = 6e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Arabidopsis thalianaSetaria italica56.1637.3284.76328forward
CNT30641079Arabidopsis thalianaNymphaea colorata50.1739.4384.64293forward
CNT30516889Arabidopsis thalianaJuglans regia26.5425.6283.23155forward
CNT30291318Arabidopsis thalianaTriticum aestivum43.4976.2885.43254forward
CNT30562825Arabidopsis thalianaActinidia chinensis46.449.0985.24271forward
CNT30586804Arabidopsis thalianaMusa acuminata26.7120.2187.18156forward
CNT30511058Arabidopsis thalianaSolanum lycopersicum23.2956.986.76136forward
CNT30442409Arabidopsis thalianaAegilops tauschii48.4642.2488.69283forward
CNT30722476Arabidopsis thalianaTriticum spelta48.4642.387.99283forward
CNT30364844Arabidopsis thalianaSorghum bicolor61.4782.3485.24359forward
CNT30369350Arabidopsis thalianaOryza glumipatula52.5744.1783.71307forward
CNT30706519Arabidopsis thalianaPrunus avium53.4237.6483.01312forward
CNT3099978Arabidopsis thalianaOryza rufipogon47.634.3287.05278forward
CNT30575061Arabidopsis thalianaOryza barthii52.5733.7783.71307forward
CNT30333708Arabidopsis thalianaCynara cardunculus59.7643.0985.96349forward

Expression of CNT30377262

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFLESHICWVSSGTVRERYCCEPLEVRGAKPTMKK*

>peptide 2 (45 aa)
NCSLTRLNISWIDVEFPMKVEAIFRPVGGISQTVDFTLLGIHSTK*

Sequence

>CNT30377262
GAACTGCTCACTCACTCGCCTGAACATCTCTTGGATCGATGTTGAGTTTCCAATGAAAGTGGAAGCCATCTTCAGACCAGTAGGTGGGATATCACAGACT
GTTGATTTCACGTTGTTGGGGATCCACTCCACAAAGTAGGACGAGTTCTTGTTCTGAACATTCAGCATCTGCTCGTCAACTTCCTTTGTGCTCATCTTGC
CACGGAACATGGCAGAGGCTGTGAGGTAGCGTCCGTGCCTTGGGTCTGCAGCACACATCATGTTCTTGGAGTCCCACATTTGCTGGGTGAGCTCAGGGAC
TGTGAGGGAGCGGTACTGCTGTGAACCTCTTGAGGTGAGAGGAGCAAAACCAACCATGAAGAAGTGAAGACGAGGGAATGGGATGAGATTCACAGCAAGC
TTACGGAGCTCAGGGACTGTGAGGGAACGGTACTGCTGAGAACCTCTTGAGGTGAGAGGAGCAAAACCCACCATGAAGAAGTGAAGACGGGGGAATGGGA
TGAGATTCACAGCAAGCTTTCGGAGGTCAGAGTTGAGTTGACCAGGGAACCTCAGACAGCAAGTCACACCAGACATAGTAGCAG