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Detailed information on CNT30377165


BLAST search results

BLAST vs Swiss-Prot:
sp|P10798|RBS3B_ARATH, E-value = 7e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30261455Arabidopsis thalianaBrassica rapa20.9560.9790.85164forward
CNT30613340Arabidopsis thalianaArabis alpina42.9148.3587.2336forward

Expression of CNT30377165

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLAMEVMSLLVLRVTGNAADDFKPVNGATMVA*

Sequence

>CNT30377165
GGAAATTTTCAAACTAGTTAACCATCGGAAAAAATCAAGACGCACGGATATATAAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAATTG
TCTCATAAAGAGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAGCTTG
GGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTC
AACTTCCTTCAACACTTGAGCGGAGTCGGTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTT
TCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAAATTAATATATCCTATGTTTTGTTTTATTGCACATGACAAAAGACAGTTTTTATTGAT
GATATTACCTTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAATGCAGCGGATGACTTCA
AGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATTACTTCTTCTTCTTCTTCTTT
TGCTTAATTGTTTTTCTATTGGTTTTGTCATCTTTATATAGTGAGAACCGTAAGAGGCAAAAAGCCCTAATGATCAAAGGGTC