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Detailed information on CNT30377120


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 2e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30312316Arabidopsis thalianaCamelina sativa61.83104.8188.01392forward
CNT30263629Arabidopsis thalianaBrassica rapa90.2299.8385.14572forward
CNT30574226Arabidopsis thalianaVitis vinifera60.4176.7581.98383forward
CNT30150023Arabidopsis thalianaBrachypodium distachyon35.0229.681.08222forward

Expression of CNT30377120

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMDYILEKKKAKRPFHQHMEKTVHLTLGINAYLDL

Sequence

>CNT30377120
GTTGGGAGATGTAGGACTGTAGGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGTTGTAG
CTTGGAGACGTAGGACCGTAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGTAGGGC
TGTAAGACGGAGATGTTGGGCTGTATGCTGGTGAAGTTGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGGGAAGTAGGACTGTAGCTCGGAGATGT
CGGGCTGTAGCTTGGCGACGTTGGGCTATAGCTTGGAGACGTTGGGCTGTAGCTCGGAGAGGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGG
CTTGTTGGGCTATAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTTGGACTGTAACCGGGAGAAGTCGGGCTATATCCAGGCGAAGTTGGACTGTAAC
CGGGAGAAGTAGGACTGTATCCAGGCGATGATGGACTATATCCTGGAGAAGAAGAAGGCGAAAAGGCCATTCCACCAACATATGGAGAAAACTGTGCATC
TGACATTGGGGATAAACGCATATTTGGACTTAAC