« Back to Arabidopsis thaliana search


Detailed information on CNT30377112


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7H1|PSAD1_ARATH, E-value = 3e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677834Arabidopsis thalianaSetaria viridis15.7221.183100forward
CNT30522550Arabidopsis thalianaSetaria italica15.7221.0183100forward
CNT30525887Arabidopsis thalianaPhaseolus vulgaris23.4339.8479.87149forward
CNT30197643Arabidopsis thalianaPisum sativum12.5836.0487.580forward
CNT30611231Arabidopsis thalianaArabis alpina54.0959.8384.01344forward
CNT302080Arabidopsis thalianaZea mays15.7223.3682100forward
CNT30215427Arabidopsis thalianaHelianthus annuus13.5224.0983.7286forward
CNT30477824Arabidopsis thalianaArabidopsis halleri48.1191.8996.73306forward
CNT30579578Arabidopsis thalianaEchinochloa crusgalli21.0716.2881.34134forward

Expression of CNT30377112

Peptides detected in this lncRNA

>peptide 1 (97 aa)
HHMHIVFGFFSLQILQIITLFASKLNFNGTNIFPNRSHVETNTFSSWIRLLWINTIFRMKILNLTVRKHSVKLLQKIRTFSHDRCSSCRHLKDLFFR*

Sequence

>CNT30377112
CACCACATGCACATAGTTTTTGGTTTTTTTAGTTTACAGATCTTACAAATCATAACTTTGTTTGCCAGTAAACTTAACTTCAATGGGACTAACATTTTTC
CCAATAGATCTCATGTTGAGACCAACACCTTCTCTTCCTGGATTCGCCTTCTCTGGATAAACACCATCTTTAGGATGAAGATATTGAACCTCACCGTTAG
GAAACACTCTGTAAAACTGCTTCAGAAGATTCGGACCTTCTCTCATGATCGCTGCTCCTCCTGTCGGCATCTCAAAGATCTGTTCTTTCGGTGAGTTCCA
CGTGATAACGTAGAACTCTTCCACTTGCGCTTTACGTAGAAGACCACCGGTGCTTCCAGCGAAGATCGGAGACGGTGTGTTTGGGTCTAGCTGCGGTGGC
GTGAATCCCACGGGAGCTTCTTTCGTGGCGGGGGAATCTGTTTTCTCGGCGCGGATTGCGGTTTTGGTGAAGGAGAGGGATTTGGGACGGTGGGTTGTTG
AGAAAAAGTGGAGTTTCTTGACGCCGGAGGTTGCGGCGGTTGTTATGGCGGAGTTGAAGATCCCGGCGGCTTGAGTTGCCATTGTTTTTTTTTTCTCTGT
TCTCTAATGAGCAAATTGCTTATTGGTATGTTTTGA