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Detailed information on CNT30377104


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315993Arabidopsis thalianaCorylus avellana55.5239.0884.18392forward
CNT30700558Arabidopsis thalianaQuercus lobata35.5592.9683.27251forward
CNT3021339Arabidopsis thalianaCitrullus lanatus66.1573.6682.66467forward
CNT30379091Arabidopsis thalianaManihot esculenta40.2348.1482.39284forward
CNT30403782Arabidopsis thalianaBeta vulgaris27.4846.4183.51194forward
CNT30708216Arabidopsis thalianaGlycine max70.488.9180.48497forward
CNT3042435Arabidopsis thalianaPrunus dulcis76.7778.3281.37542forward
CNT3091732Arabidopsis thalianaSolanum tuberosum69.9743.3779.76494forward
CNT30508904Arabidopsis thalianaSolanum lycopersicum74.2284.7980.53524forward
CNT30311656Arabidopsis thalianaCamelina sativa75.9296.5890.86536forward
CNT30141877Arabidopsis thalianaLolium perenne36.457.3782.1257forward
CNT30648253Arabidopsis thalianaRosa chinensis77.6282.1682.66548forward
CNT30205386Arabidopsis thalianaHelianthus annuus33.1432.7382.48234forward
CNT30713436Arabidopsis thalianaMalus domestica golden30.0365.8482.55212forward
CNT30350932Arabidopsis thalianaEragrostis tef44.4870.2582.48314forward
CNT30366857Arabidopsis thalianaSorghum bicolor56.3740.5382.41398forward
CNT30596739Arabidopsis thalianaOryza meridionalis37.8241.0882.02267forward
CNT30354836Arabidopsis thalianaLactuca sativa41.6450.9582.31294forward
CNT30573870Arabidopsis thalianaVitis vinifera88.9589.0880.25628forward
CNT3027877Arabidopsis thalianaTheobroma cacao34.762.0384.9245forward
CNT3051702Arabidopsis thalianaAmborella trichopoda70.481.2180.28497forward
CNT30330867Arabidopsis thalianaDioscorea rotundata30.7430.0183.41217forward
CNT30150463Arabidopsis thalianaBrachypodium distachyon46.4637.3280.49328forward
CNT30577473Arabidopsis thalianaOryza barthii37.8248.9981.65267forward
CNT30114394Arabidopsis thalianaFicus carica24.0828.5784.71170forward
CNT30335475Arabidopsis thalianaCynara cardunculus36.6919.9481.47259forward

Expression of CNT30377104

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMDYILEKKKAKRPFHQHMEKTVHLTLGIN

>peptide 2 (36 aa)
MLGCKKVKLGCKKERLGCMLVKSGCKQAKSGCNLGK*

Sequence

>CNT30377104
CTGTAGTTGGGAGATGTAGGACTGTAGGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGT
TGTAGCTTGGAGACGTAGGACCGTAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGT
AGGGCTGTAAGACGGAGATGTTGGGCTGTAAGATGGTGAAGTAGGGCTGTAAGAAGGCGATGTTGGGCTGTAAGAAGGTGAAGTTGGGCTGTAAGAAGGA
GAGGTTGGGCTGTATGCTGGTGAAGTCGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGGGAAGTAGGACTGTAGCTCGGAGATGTCGGGCTGTAGC
TTGGCGACGTTGGGCTATAGCTTGGAGACGTTGGGCTGTAGCTCGGAGAGGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCT
ATAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTTGGACTGTAACCGGGAGAAGTCGGGCTATATCCAGGCGAAGTTGGACTGTAACCGGGAGAAGTA
GGACTGTATCCAGGCGATGATGGACTATATCCTGGAGAAGAAGAAGGCGAAAAGGCCATTCCACCAACATATGGAGAAAACTGTGCATCTGACATTGGGG
ATAAAC