Detailed information on CNT30376989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001211, E-value = 3e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677823Arabidopsis thalianaSetaria viridis40.0647.5385.6125forward
CNT30728061Arabidopsis thalianaCorchorus capsularis58.6519.2284.15183forward
CNT30155931Arabidopsis thalianaPistacia vera46.1546.4585.42144forward
CNT30313575Arabidopsis thalianaCamelina sativa55.1373.8287.79172forward
CNT3062349Arabidopsis thalianaArabidopsis lyrata65.7123.5488.29205forward
CNT30621035Arabidopsis thalianaCajanus cajan47.7621.7885.91149forward

Expression of CNT30376989

Peptides detected in this lncRNA

>peptide 1 (90 aa)
ISKLQGTETDIVKSFVIQNHTFISILNELVNGKSSIVWLNNCIRDLRRWEDRKGHHHTIWIFLSNLRNKKCSRSIRTARGTYLPPLASLK*

Sequence

>CNT30376989
GGATTAGCAAGCTTCAAGGTACGGAAACAGATATCGTAAAGAGCTTCGTTATCCAAAACCATACATTCATCAGCATTCTCAACGAGCTGGTGAACGGAAA
GAGTAGCATTGTATGGCTCAACAACTGTATCAGAGACCTTAGGAGATGGGAAGACCGAAAAGGTCATCATCATACGATCTGGATATTCCTCTCTAATCTT
AGAAATAAGAAGTGCTCCAGATCCATAAGAACAGCACGAGGAACGTATTTGCCTCCGCTAGCTTCGTTAAAATAGACATTGATCCTTTCAAGCTGTAGAT
CTGTATCGCCAC