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Detailed information on CNT30376918


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 2e-125

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201346Arabidopsis thalianaPisum sativum89.3761.9283.72639forward
CNT30540607Arabidopsis thalianaBrassica napus93.4345.2686.38668forward
CNT30235037Arabidopsis thalianaBrassica oleracea93.4327.6685.63668forward
CNT30171103Arabidopsis thalianaTrifolium pratense80.9833.784.46579forward
CNT30312626Arabidopsis thalianaCamelina sativa99.7255.0289.34713forward
CNT3061726Arabidopsis thalianaArabidopsis lyrata58.3265.6788.25417forward
CNT3080575Arabidopsis thalianaBrassica juncea93.4379.4387.28668forward
CNT30264722Arabidopsis thalianaBrassica rapa95.9464.8487.03686forward
CNT30612915Arabidopsis thalianaArabis alpina93.4368.5886.23668forward
CNT30120569Arabidopsis thalianaCitrus clementina92.4537.683.21661forward

Expression of CNT30376918

Peptides detected in this lncRNA

>peptide 1 (79 aa)
QDQVKSRLLLDVVVGQSTSILKLLSSEDETLLVRRNTFLVLDLGLDVVNGVGAFHFKVIVFPVRVFTKICIPPRRRKTK*

>peptide 2 (60 aa)
MKGGLLLDIVVSKSSAILQLLSGEDQPLLVRRNTLFVLDLGLDVVDGVRTLHLKSNRLSR*

>peptide 3 (36 aa)
MVSELSTSRVIVFPVRVLTKICIPPRSLRTKWRVDSF

>peptide 4 (31 aa)
MVSELSTSKVMVFPVRVFTKICIPPRRRKTK*

>peptide 5 (30 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSR*

Sequence

>CNT30376918
CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGT
CCGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCAAGGTGATAGTCTTTCCGGTGAGAGTCTTC
ACGAAGATCTGCATACCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTTCCATCTTCAAGTTGCT
TTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAA
AGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATACCTCCACGCAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCA
GCAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCTTGGATCTTGGCCTTGACGTTGT
CGATGGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCATACCACCACGGAGCCTGAGGACCAAGTGGAG
GGTGGATTCCTTCTG