« Back to Arabidopsis thaliana search


Detailed information on CNT30376781


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-108

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541492Arabidopsis thalianaBrassica napus75.3732.6688.45407forward
CNT30234332Arabidopsis thalianaBrassica oleracea76.4834.5387.41413forward

Expression of CNT30376781

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVRVLTKICIPPRSLRTKWRVDSFWIL*

>peptide 2 (29 aa)
MPSLSWILALTLSMVSELSTSRVIVFPVRV

>peptide 3 (41 aa)
FVLDLGFHVINGVRTLHLQSDVFPVNVLTKICIPPRSLRTR*

>peptide 4 (60 aa)
MKGGLLLDIVVSKSSAILQLLSGEDQPLLVRRNTLFVLDLGLDVVDGVRTLHLKSNRLSR*

Sequence

>CNT30376781
CTTTGTCCTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGTGATGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCATA
CCACCACGGAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCA
GCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTTTCC
CGTTAGGGTTTTAACGAAAATCTGCATACCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAACGTACGGCCA
TCCTCTAGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGC
TTTCCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTT