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Detailed information on CNT30376647


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381141Arabidopsis thalianaManihot esculenta44.1636.979.79193forward
CNT3061849Arabidopsis thalianaArabidopsis lyrata52.1755.6197.37228forward
CNT30115784Arabidopsis thalianaOryza nivara16.9330.9685.1474forward

Expression of CNT30376647

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MIGRAKAAIKAKDLAVAEESDSALLRRSVEEVRDLGIWGSLANLGIWTRFGCWLDDREIRGLEEAIIELA

>peptide 2 (83 aa)
LSLLLHLVKRGGDLSPSCSHHGGGLLIELLYFSRSVLNTRELLFDGSVSLIHEVTKRRVIDLVESEHQEEKLNNDDRKSESGD*

Sequence

>CNT30376647
ACCTGAGTCTCCTTCTTCATCTTGTTAAGCGCGGCGGCGATCTCAGCCCTAGCTGCTCTCATCACGGCGGCGGCTTGCTCATCGAGCTCCTTTACTTCAG
TCGAAGTGTCCTTAACACTCGCGAGCTTCTCTTTGATGGAAGCGTCTCTTTGATCCATGAAGTTACCAAGCGGAGAGTAATAGACCTTGTCGAGAGCGAA
CATCAAGAAGAGAAACTCAACAACGATGATCGGAAGAGCGAAAGCGGCGATTAAAGCTAAGGATTTGGCGGTGGCGGAGGAGAGTGATAGTGCTTTGCTA
CGGAGATCGGTGGAGGAAGTGAGGGATTTGGGAATTTGGGGAAGTTTGGCGAATTTGGGAATTTGGACTCGGTTTGGTTGTTGGTTGGATGACAGGGAGA
TTAGGGGTTTGGAGGAAGCCATTATCGAATTAGCAGC