Detailed information on CNT30376640


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 1e-117

BLAST vs NONCODE:
NONBRAT004190, E-value = 3e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619260Arabidopsis thalianaSesamum indicum50.3138.0384.69405forward
CNT30402445Arabidopsis thalianaBeta vulgaris21.2438.5189.47171forward
CNT30709695Arabidopsis thalianaGlycine max29.0770.0689.32234forward
CNT30612558Arabidopsis thalianaArabis alpina46.4699.292.78374forward
CNT30573685Arabidopsis thalianaVitis vinifera15.2831.5487.8123forward
CNT30705212Arabidopsis thalianaPrunus avium18.2639.9591.16147forward

Expression of CNT30376640

Peptides detected in this lncRNA

>peptide 1 (67 aa)
NLQKPITLINTDIWSTSSEDQYLKLFHSPTTTQHKTTSRSEPEPLCRLSLSLSTCSEEACMVPQLEC*

>peptide 2 (38 aa)
MGSISVTMTLAPAVFMAAAQPFPTSPYPQITATFPAIMT

>peptide 3 (35 aa)
MQPSHPNAWEERTPSSRTFRLLSRSRARAGQSPGW*

>peptide 4 (41 aa)
MLGKNVHLLLVLSACFLVPELELGNHLVGERARHHETWPRQ*

>peptide 5 (41 aa)
MLHTIALFFIFLMWSTMMMSLLPVVVTKISASETTSSRVRT*

Sequence

>CNT30376640
ACAACCTTCAAAAGCCAATAACCCTTATTAATACTGATATTTGGTCAACTTCATCAGAAGACCAATATCTCAAACTGTTCCACTCTCCCACCACAACCCA
ACACAAAACCACAAGTAGATCCGAACCTGAACCGCTTTGTCGACTCTCTCTCTCTCTCAGTACCTGTAGTGAGGAGGCTTGTATGGTCCCTCAATTGGAA
TGCTGACGTAGTCAGATTGGTCCTTTGACAGCTTTGTAAGCCTGGCTCCAAGCTTGCCCAAGTGAAGTAATGCAACCTTCTCATCCAAATGCTTGGGAAG
AACGTACACCTTCTTCTCGTACTTTCCGCTTGCTTTCTCGTTCCAGAGCTCGAGCTGGGCAATCACCTGGTTGGTGAAAGAGCAAGACATCACGAAACTT
GGCCAAGACAATGATTCCAGCCTTGGTCTCTGGGAACACCCACCTGTCAGTCTGTGGCTTGATGGTGATACGCTTCACACCAGGGTAAGTCTCAAGTCCA
AGCATGTCAATCTCATTGTCAAAGTGACCAATGTTGCACACAATAGCGTTGTTCTTCATCTTCCTCATGTGGTCGACCATGATGATGTCTTTGTTACCGG
TGGTGGTGACAAAGATATCAGCTTCTGAGACAACATCCTCAAGGGTAAGAACCTGAAGTCCTTCCATCAAAGCTTGAAGGGCACAGATGGGATCAATCTC
AGTCACAATGACTCTAGCACCAGCAGTCTTCATGGCAGCAGCACAACCCTTTCCAACATCACCATATCCACAGATAACAGCAACCTTTCCAGCGATCATG
ACATC