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Detailed information on CNT30376476


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 8e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30480474Arabidopsis thalianaArabidopsis halleri40.8281.991.58380forward

Expression of CNT30376476

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLNVRKMTRETGTLRLMPKTLAFRAVQRQAAASRSTKPLRSEQQGFTGGVPN*

>peptide 2 (36 aa)
MPKTLAFRAVQRQAAASRSTKPLRSEQQGFTGGVPN*

Sequence

>CNT30376476
GATTGAACAAATTGATAAAAATGGATACAGTACGAGAAGTATAAGAAACACTTAACTGAAAATAGGAGAATTCAAAGAATCTTAATCAAGGAAAAACATC
AAAAGATAACTTAAACATTATAATCAATCGAAGGGTGGATAGATATATCAAGCACATACGAAACCAGAAGGAACCTTCTTGCCACAAACATTGAGAAGAA
GGCTGAGAGAGACGGGAACATTAAGATTAATGCCTAAAACTTTAGCCTTTAGGGCGGTGCAGAGACAAGCGGCAGCCTCAAGATCAACTAAACCATTGAG
GAGCGAACAACAAGGCTTCACTGGTGGTGTTCCCAACTGAATTTTGAGAAGATCCTTGAGAACATTGGCGCAAACGCCGAGCTTGAGAGTGTCTTTAGGG
CAGCTTCCGGTGGACTTGGGCTTAGGTTTGGGTTTAGGGGTGGAACTGCAGCCACCGCCACATGCGGTGGTTAAAGTGAAAAAAAGAATGTTGAATGTGA
GGAAAATGACAAGAGAGACGGGAACATTAAGATTAATGCCTAAAACTTTAGCCTTTAGGGCGGTGCAGAGACAAGCGGCAGCCTCAAGATCAACTAAACC
ATTGAGGAGCGAACAACAAGGCTTCACTGGTGGTGTTCCCAACTGAATTTTGAGAAGATCCTTGAGAACATTGGCGCAAACGCCGAGCTTGAGAGTGTCT
TTAGGGCAGCTTCCGGTGGACTTGGGCTTAGGTTTGGGTTTAGGGGTGGAACTGCAGCCACCGCCACATGCGGTGGTTAAAGTGAAAAAAAGAATGTTGA
ATGTGAGGAAAATGACAAGAGAGGCTGAAATTTTTGAAGCCATTTCTCAAAAAATCAAATTTCTATTTTAGGTAAGAAGTTTTAAGATAGAAGTATTGCC
AAAAGAGAGTGGTGAAGATAAATGAAGAGAG