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Detailed information on CNT30376427


BLAST search results

BLAST vs Swiss-Prot:
sp|P29517|TBB9_ARATH, E-value = 7e-115

BLAST vs NONCODE:
NONBNAT007651, E-value = 1e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381383Arabidopsis thalianaManihot esculenta53.6518.8483.38331forward
CNT30486254Arabidopsis thalianaOlea europaea27.3944.1385.21169forward
CNT3092760Arabidopsis thalianaSolanum tuberosum23.9921.3988.51148forward
CNT30203517Arabidopsis thalianaHelianthus annuus68.437.5483.41422forward
CNT3036150Arabidopsis thalianaCucumis melo20.7537.9889.84128forward

Expression of CNT30376427

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MPFSNQWELYRRRLISRYLESIQQSMRSFCSGRSSSVHQPLWYSSFHGRQQKLSSNDHDEDQLHTSCFWHPTSVELAQGHSRHCIVEILLMSKVQNQ

>peptide 2 (44 aa)
LEQILGLGKKFNNKTHKAQKERIPIQKKRLLLLLRPPRTPLHRL*

>peptide 3 (78 aa)
MAVNCSLTRLNISWIEVEFPMKVDAIFKPVGAISQTLDFTLFGIHSTKYEEFLFWTFIICSSTSLVLIFPRKTAEAVK*

Sequence

>CNT30376427
CTGGAACAAATCTTAGGTTTGGGAAAGAAATTCAATAACAAAACACACAAAGCACAAAAAGAGAGAATCCCAATTCAGAAAAAGAGGCTTCTTCTTCTTC
TTCGTCCTCCTCGTACTCCTCTTCACCGACTGTAGCATCTTGATATTGCTGATACTCTGCAACAAGATCATTCATGTTACTCTCTGCTTCAGTGAACTCC
ATCTCGTCCATTCCTTCTCCTGTGTACCAATGAAGGAAAGCCTTTCTCCTGAACATGGCAGTGAACTGTTCACTCACACGCCTGAACATTTCCTGGATTG
AAGTTGAGTTTCCAATGAAAGTTGATGCCATTTTCAAACCAGTGGGAGCTATATCGCAGACGCTTGATTTCACGTTATTTGGAATCCATTCAACAAAGTA
TGAGGAGTTTTTGTTCTGGACGTTCATCATCTGTTCATCAACCTCTTTGGTACTCATCTTTCCACGGAAGACAGCAGAAGCTGTCAAGTAACGACCATGA
CGAGGATCAGCTGCACACATCATGTTTTTGGCATCCCACATCTGTTGAGTTAGCTCAGGGACACTCAAGGCACTGTATTGTTGAGATCCTCTTGATGTCA
AAGGTGCAAAACCAACC