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Detailed information on CNT30376211


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 3e-84

BLAST vs NONCODE:
NONBRAT004190, E-value = 1e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Arabidopsis thalianaSetaria viridis49.7972.8787.22360forward
CNT30380227Arabidopsis thalianaManihot esculenta21.9938.1390.57159forward
CNT30543653Arabidopsis thalianaBrassica napus45.9248.1292.77332forward
CNT30261371Arabidopsis thalianaBrassica rapa57.2699.0491.06414forward
CNT30231757Arabidopsis thalianaAnanas comosus14.3839.5486.54104forward
CNT30680065Arabidopsis thalianaTriticum urartu19.3636.9482.86140forward
CNT30720770Arabidopsis thalianaTriticum spelta21.8526.3383.54158forward
CNT30358660Arabidopsis thalianaLactuca sativa29.1838.1682.94211forward
CNT3021984Arabidopsis thalianaPopulus trichocarpa51.4517.3986.29372forward
CNT30329805Arabidopsis thalianaDioscorea rotundata41.3650.9482.61299forward
CNT30103876Arabidopsis thalianaOryza rufipogon48.4177.2685.71350forward
CNT30117878Arabidopsis thalianaOryza nivara48.4177.7885.43350forward
CNT30723539Arabidopsis thalianaLupinus angustifolius50.928.9184.78368forward

Expression of CNT30376211

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLHTIALFFIFLMWSTMMMSLLPVVVTKISASETTSSRVRT*

>peptide 2 (34 aa)
MQPSHPNAWEERTPSSRTFRLLSRSRARAGQSPG*

>peptide 3 (67 aa)
LLILIFGQLHQKTNISNCSTLPPQPNTKPQVDPNLNRFVDSLSLSVPVVRRLVWSLNWNADVVRLVL*

>peptide 4 (50 aa)
MGSISVTMTLAPAVFMAAAQPFPTSPYPQITATFPAIMTSVALMRPSGSE*

>peptide 5 (60 aa)
LINTDIWSTSSEDQYLKLFHSPTTTQHKTTSRSEPEPLCRLSLSLSTCSEEACMVPQLEC*

>peptide 6 (47 aa)
MLGKNVHLLLVLSACFLVPELELGNHLGKSQVQACQSHCQSDQCCTQ*

Sequence

>CNT30376211
CTTATTAATACTGATATTTGGTCAACTTCATCAGAAGACCAATATCTCAAACTGTTCCACTCTCCCACCACAACCCAACACAAAACCACAAGTAGATCCG
AACCTGAACCGCTTTGTCGACTCTCTCTCTCTCTCAGTACCTGTAGTGAGGAGGCTTGTATGGTCCCTCAATTGGAATGCTGACGTAGTCAGATTGGTCC
TTTGACAGCTTTGTAAGCCTGGCTCCAAGCTTGCCCAAGTGAAGTAATGCAACCTTCTCATCCAAATGCTTGGGAAGAACGTACACCTTCTTCTCGTACT
TTCCGCTTGCTTTCTCGTTCCAGAGCTCGAGCTGGGCAATCACCTGGGTAAGTCTCAAGTCCAAGCATGTCAATCTCATTGTCAAAGTGACCAATGTTGC
ACACAATAGCGTTGTTCTTCATCTTCCTCATGTGGTCGACCATGATGATGTCTTTGTTACCGGTGGTGGTGACAAAGATATCAGCTTCTGAGACAACATC
CTCAAGGGTAAGAACCTGAAGTCCTTCCATCAAAGCTTGAAGGGCACAGATGGGATCAATCTCAGTCACAATGACTCTAGCACCAGCAGTCTTCATGGCA
GCAGCACAACCCTTTCCAACATCACCATATCCACAGATAACAGCAACCTTTCCAGCGATCATGACATCAGTGGCCCTCATGAGACCATCAGGGAGTGAGT
GACGGCAACCATACAAGTTGTCG